SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G16785 | AT | Annotation by Michelle Graham. TAIR10: phospholipase D P1 | chr3:5711329-5718696 FORWARD LENGTH=1096 | SoyBase | E_val: 0 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0007154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell communication | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0016036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation | SoyBase | N/A | ISS |
| GO:0019375 | GO-bp | Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0042631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0048527 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lateral root development | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004630 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phospholipase D activity | SoyBase | N/A | ISS |
| GO:0005543 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phospholipid binding | SoyBase | N/A | ISS |
| KOG1329 | KOG | Phospholipase D1 | JGI | ISS | |
| PTHR18896 | Panther | PHOSPHOLIPASE D | JGI | ISS | |
| PTHR18896:SF2 | Panther | PHOSPHOLIPASE D ZETA | JGI | ISS | |
| PF00614 | PFAM | Phospholipase D Active site motif | JGI | ISS | |
| PF00787 | PFAM | PX domain | JGI | ISS | |
| UniRef100_B9RTA5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phospholipase d zeta, putative n=1 Tax=Ricinus communis RepID=B9RTA5_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MGP5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGP5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g16270 not represented in the dataset |
Glyma15g16270 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g04620 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g152100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g16270.1 sequence type=CDS gene model=Glyma15g16270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGACGGAGCAGTTAATGTCCGGCGGCGGCTCCCGCTACGTCCAAATGAAATCGTCTCCGCCGTCGTCTCCGCCAGCCGCGGCGGCCGAGGAGATGTCCTCGGTCCCGTCGTTCCGGCACAGCGGCGCCGAGGCCAATCGGATTTTCGAGGAATTGCCGAAAGCCTCCATAGTCTCCGTCTCCCGCCCCGACGCCAGCGACATCAGCCCCATGCAACTCTCTTACACAATTCAGGTTCAGTACAAACAGTTCAAGTGGGAGCTAACAAAGAAAGCCCATCAAGTATTTATTTTGCATTTCTCGCTAAAGAAACGTGCCTTTATTGAGGAAATCCACGAGAAGCAAGAGCAGGTTAAAGAATGGCTTCAAAATCTAGGAATTGGAGAACACACTGCTATGGTGCAAGATGACGATGAAGGTGATGATGAAACTGTCCCGTTGCATACTGAAGAAACTCATGAAAGTGCCAAGGACAGAGATGTTCCATCTAGTGCTGCTCTGCCAATTATACGGCCAGCCTTGGGAAGACAGCATTCTATTGCAGACAGGGCAAAGAGAGCAATGCAAGGATATCTGAATCACTTTCTGGGAAATATCAGTATTGTGAACTCTCATGAGGTTTGCAAGTTTTTGGAGGTATCAAAGTTATCTTTTTCACCTGAATATGGTCCTAAGCTGAAGGAAGAATATGTGATGGTGAAGCATCTACCCAAAATCCAGAAGGATGATGATTCCAGAAAGTGTTGTTTGTCTGACTGTTTTAGTTGCTGTAATGACAATTGGCAAAAGGTATGGGCTGTACTGAAACCTGGATTCTTGGCATTGCTGGCAGATCCTTTCGATACACAGCCTCTGGATATCATTGTTTTTGATGTACTGCCTGCCTCAGATGGGAATGGGGATGGTCGATTATCACTGGCGAGTGAGATGAAGGAACGAAATCCTTTACGCCATTCATTCAAGGTGACTTGTGGAATCCGGAGCATCAGAATTAGAGTGAAAAGTAGTAGTAAAGTTAAAGATTGGGTTGCTGCAATCAATGATGCTGGACTCAGGCCTCCTGAAGGCTGGTGTCATCCTCACCGTTATGGTTCATTTGCTCCTCCAAGAGGCCTAGTCGAAGATGGAAGTCAAGCCCAGTGGTTCATTGATGGACGAGCAGCATTTGAGGCCATTGCTTCTTCAATTGAGGCTGCAAAATCAGAGATATTTATCTGTGGGTGGTGGCTGTGCCCAGAACTGTACCTACGGCGACCTTTCCACACTCATGCTTCGTCAAGGCTTGATAATTTGTTGGAAGCAAAAGCTAAGCAAGGGGTTCAGATTTACATTCTTCTCTACAAAGAGGTGGCTCTTGCTTTGAAAATAAACAGTGTTTATAGCAAGAAAAAGCTTCTTAGCATTCATGAGAATGTGAGGGTATTACGCTATCCTGACCACTTTTCTACTGGTGTTTACCTGTGGTCGCATCATGAAAAACTAGTCATTATTGATAATCATATTTGCTTTATTGGTGGACTGGATTTATGCTTTGGTCGTTATGACACATCTGAGCATAAAGTGGGAGATTTCCCTCCTCTAATCTGGCCTGGAAAAGACTATTATAACCCAAGAGAATCTGAACCTAATTCATGGGAAGATACAATGAAAGATGAATTAGAACGTGAAAAATATCCTCGTATGCCTTGGCATGATGTTCATTGTGCCCTTTGGGGACCACCTTGCCGTGACATTGCTAGGCACTTTGTTCAGCGATGGAATTATGCCAAGAGGAACAAAGCTCCATATGAGCAAGCAATTCCATTACTTATGCCTCAGCATCATATGGTTATTCCACATTACTTGGGAAGAAGCAGAGAGATACAGATTGCAAGTAGGAACATTGACAATCATAGAGTTCTCAAGAGAGAAGATTCATTTTCCTCATCTTCCCAAGACCAAGATATTCCTCTACTTTTGCCTCAGGAGTCTGATGGGTTGGATACTCATGAAGGAGACCAAAAATTGAATGGGGTAATCTCCTTTTCACATCAGCTTGACAAGCCAAGAAGGATCAGCAGTGGTCTTCCATTCTCGTTCCGGAAGGCCAAAATTGTAGCAGTTGGCCCAGATACACCAATGAAGGGCTTTGTAGATGATCTAGATTCTGAGCATGATCGTGAGAAAATGTCTCTTGATAGAGTGGCTCATATTGATTTACAAAGTACAAATCCAGAATGGTGGGAAACACAAGAACGGGGTGACCAAGGAGGTTTTGCTGAAGAATCAGGACAAGTTGGTCCTCTTGCTTCCTGTCGTTGCCAAGTTATTAGGAGCGTAAGTCAATGGTCTGCTGGAACAAGTCAAACTGAAGAGAGCATCCACAATGCCTATTGCTCTCTTATTGAGAAAGCTGAATACTTCATCTACATTGAGAATCAATTTTTTATCTCGGGTCTTTCTGGAGATGAGATGATACGGAATCGTGTGTTAGAAGCTTTATATCGACGGATTATGCGAGCTTACAATGACAAAAAATCTTTCAGGGTTATAGTTGTCATACCTCTCCTGCCTGGCTTCCAGGGTGGTCTTGATGATAGCGGTGCAGCATCCGTGAGGGCCATAATGCATTGGCAGTATCGAACCATTTGCCGGGGGCAGAATTCTATCTTGCATAATCTTTATGAACTTCTTGGTTCTAAAATACATGACTACATCTCTTTTTATGGCCTAAGGTCTTACGGTAGACTCTCTAATGGTGGCCCTGTGGCAACCAGCCAGGTGTATGTTCACAGTAAAATCATGATTGTTGATGATTGTATTACTTTGATTGGATCTGCTAATATTAATGATAGGAGCTTACTTGGCTCCAGAGATTCTGAGATTGGTATAGTTTTAGAAGACAGAGAGTTTATTGGTTCTTATATGGATGGAAAGCCTTGGAAAGCAGGAAAGTTTTCCTTGACCCTCCGATTGTCATTATGGTCTGAACACTTGGGTCTCCCTATAGGAGAGGTCAATCAAATAATGGACCCAGTTGTTGAATCTACTTACAGGGATATTTGGATGGCAACAGCAAAGACAAATACTACAATTTACCAGGATGTCTTTTCTTGCGTACCTAATGATCTGATACATACCAGATTTTCTTTCAGACAAAGTGTGGCGTTTTGGAAAGAAAGAATTGGTCACACAACCATTGATTTAGGAATAGCCCCAGAAAAATTAGAGTCCTATCATGATGGAGGCATTAAGAACACCGATCCCTTGGAGAGATTAGCATCATTGAAGGGTCATCTCGTCTCCTTTCCCTTGGAGTTCATGTGTCAGGAAAGTCTAAGACCCGCTTTTAATGAAAGCGAATACTACGCCACTCAAGTTTTCCATTGA
>Glyma15g16270.1 sequence type=predicted peptide gene model=Glyma15g16270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATEQLMSGGGSRYVQMKSSPPSSPPAAAAEEMSSVPSFRHSGAEANRIFEELPKASIVSVSRPDASDISPMQLSYTIQVQYKQFKWELTKKAHQVFILHFSLKKRAFIEEIHEKQEQVKEWLQNLGIGEHTAMVQDDDEGDDETVPLHTEETHESAKDRDVPSSAALPIIRPALGRQHSIADRAKRAMQGYLNHFLGNISIVNSHEVCKFLEVSKLSFSPEYGPKLKEEYVMVKHLPKIQKDDDSRKCCLSDCFSCCNDNWQKVWAVLKPGFLALLADPFDTQPLDIIVFDVLPASDGNGDGRLSLASEMKERNPLRHSFKVTCGIRSIRIRVKSSSKVKDWVAAINDAGLRPPEGWCHPHRYGSFAPPRGLVEDGSQAQWFIDGRAAFEAIASSIEAAKSEIFICGWWLCPELYLRRPFHTHASSRLDNLLEAKAKQGVQIYILLYKEVALALKINSVYSKKKLLSIHENVRVLRYPDHFSTGVYLWSHHEKLVIIDNHICFIGGLDLCFGRYDTSEHKVGDFPPLIWPGKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRNKAPYEQAIPLLMPQHHMVIPHYLGRSREIQIASRNIDNHRVLKREDSFSSSSQDQDIPLLLPQESDGLDTHEGDQKLNGVISFSHQLDKPRRISSGLPFSFRKAKIVAVGPDTPMKGFVDDLDSEHDREKMSLDRVAHIDLQSTNPEWWETQERGDQGGFAEESGQVGPLASCRCQVIRSVSQWSAGTSQTEESIHNAYCSLIEKAEYFIYIENQFFISGLSGDEMIRNRVLEALYRRIMRAYNDKKSFRVIVVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLYELLGSKIHDYISFYGLRSYGRLSNGGPVATSQVYVHSKIMIVDDCITLIGSANINDRSLLGSRDSEIGIVLEDREFIGSYMDGKPWKAGKFSLTLRLSLWSEHLGLPIGEVNQIMDPVVESTYRDIWMATAKTNTTIYQDVFSCVPNDLIHTRFSFRQSVAFWKERIGHTTIDLGIAPEKLESYHDGGIKNTDPLERLASLKGHLVSFPLEFMCQESLRPAFNESEYYATQVFH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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