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Report for Sequence Feature Glyma15g16202

Feature Type:gene_model
Chromosome:Gm15
Start:12536554
stop:12546033
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g16202
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G45775AT Annotation by Michelle Graham. TAIR10: Ribosomal L5P family protein | chr5:18565281-18566496 REVERSE LENGTH=182 SoyBaseE_val: 5.00E-14ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0022625GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
PTHR11994Panther 60S RIBOSOMAL PROTEIN L11-RELATED JGI ISS
PTHR11994:SF2Panther 50S RIBOSOMAL PROTEIN L5P JGI ISS
PF00281PFAM Ribosomal protein L5 JGI ISS
UniRef100_I1PT90UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Oryza glaberrima RepID=I1PT90_ORYGL SoyBaseE_val: 3.00E-14ISS
UniRef100_J3XLP2UniRef Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein n=1 Tax=Lycoris longituba RepID=J3XLP2_9ASPA SoyBaseE_val: 8.00E-12ISS

Expression Patterns of Glyma15g16202
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g16202 not represented in the dataset
Glyma15g16202 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g16202 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g151500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g16202
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g16202
>Glyma15g16202.1   sequence type=CDS   gene model=Glyma15g16202   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACTTCCATAAAAGTTCACATGGAGCTATTAATGTGCAAAGATACTCTTTGGACAGATTTGCAGAGGTGCTGCATTGTGGAATTCTCACCATCTCGATCACTTATCTTGGTGTTCCGGTAGGCATTAATGCTCGCAAAGAGGACACTTGGAGGATAGTAATCCAAAAAATGCAAAGCAAGCTAACTCCGTGGAGGCAAAGGCATCTCTCAATCCGAGGACGAGCTTCAGAGAAGAAACTTTCAAACCCAATGAGGGAGATAAAGGTGCAGAAGCTCGTCCTCAATATCTCCGTTAGTGAGAGTGGAGATCATCTCACCAGAGCCACTAAGCTTGGTTTTGACAGCAAGGTACACTTATTCGTTCCTTTGGGATTAGAAGAAATGAGAAGATTGCATGCTATGTTATTGTCAAAGGTGACAAGGCGATGCAACTTTTGGAGAGTGGTTTGA
Predicted protein sequences of Glyma15g16202
>Glyma15g16202.1   sequence type=predicted peptide   gene model=Glyma15g16202   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNFHKSSHGAINVQRYSLDRFAEVLHCGILTISITYLGVPVGINARKEDTWRIVIQKMQSKLTPWRQRHLSIRGRASEKKLSNPMREIKVQKLVLNISVSESGDHLTRATKLGFDSKVHLFVPLGLEEMRRLHAMLLSKVTRRCNFWRVV*






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