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Report for Sequence Feature Glyma15g16041

Feature Type:gene_model
Chromosome:Gm15
Start:12355142
stop:12357829
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g16041
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G47800AT Annotation by Michelle Graham. TAIR10: multidrug resistance-associated protein 4 | chr2:19574944-19580383 FORWARD LENGTH=1516 SoyBaseE_val: 1.00E-49ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006855GO-bp Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009624GO-bp Annotation by Michelle Graham. GO Biological Process: response to nematode SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0010118GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal movement SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0000325GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008517GO-mf Annotation by Michelle Graham. GO Molecular Function: folic acid transporter activity SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
GO:0042626GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances SoyBaseN/AISS
PTHR24223Panther FAMILY NOT NAMED JGI ISS
PTHR24223:SF201Panther JGI ISS
UniRef100_I1NB55UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NB55_SOYBN SoyBaseE_val: 9.00E-58ISS
UniRef100_Q8LGN7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Multidrug resistance-associated protein MRP1 (Fragment) n=1 Tax=Triticum aestivum RepID=Q8LGN7_WHEAT SoyBaseE_val: 6.00E-54ISS

Expression Patterns of Glyma15g16041
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g16041 not represented in the dataset
Glyma15g16041 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g16041 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g149900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g16041
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma15g16041
>Glyma15g16041.2   sequence type=transcript   gene model=Glyma15g16041   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGTTTCTAATTTAAGAACTTGATTCTATTTCTCCCTCATTAGGAACAAAAGAGTGGGGCTGCAATTCTTCTACTTGTTCTCCTGGACTCTTCATCTACTCCTTTTTGCCTTTTGGTGTCTCTCTTATTCACTACTTGCATTCTTCAGTCTCTTTTATTCTATTATAAATTTCGCATTGGACATGACATTCACATAGCTTATCCTTTCACCTTTTTCCTCCTCCTTAAACCCTATCACACTCTCCCTAAACCCTAAATCCCTAACCTCTTCGCCACAACAGCATTTCAATCTCAACATTCTCCAGCATTGGCGCCGAAGGCCTAATTCCACTCTGTGGTGCTCCACCTCCTCGTTCTCGGAGAAGCACCACACGAACTCCTCAAACTTTGATGTTCCCTCTCCCTTTGGTCCTCTTCTCGGGCACCATCCTCCCCTGATGCGCATGCTCCTCTACACCACCGGTGGAATCCTAAACTGTGGCCTCACTCACATGGTTGTCACTCCTCTTGACCTAGTCAAGTGTAATATGCAGAAAATGTTGGTTTATCTCTCTCTTATGGGTTGTCCTTAAATGGTCTCTTGTTCTGGCTTGTCTACATGAGTTGTTTAATCAAAAACAAAATGGTGTTTGTGGAAAAGATACAACAGCTCACAAATATTCCATCTGAACCAACATGGAATATCAGGCATCATCTTCCTCCTTCAAATTGGCCAGTTGAAGGCAATGTAGATATCAAAGACTTGCAGGTTAGATATCATCTAAACACTCCTCTGGTTCTTAAAGGCATTAGCATTAGTGGAGGTGAAAAGGTTGGTGTTGTTGGTCGAACTGGGAGCGAAAAGTCAACTTTAATTCAAGTATTCTTTAGGCTGGTGGAACCTTCAAGAGGGAAAATAACAATTGATGACCTTGTGGGAGCTACGAGAACCCAAGGGAATGGGGACATGAAAAAAAAATCCCCCATGATGGGATTTGGGAACACGAAGGGATGATGGGGATAGAAGATGCGAAGGGAAAGGTAGTTGGTGGATGGGGAGCGAGGGAGTAATTCCGGCTTCTGTCTTGCCCCATTGATATTCATAACAAGAAAAAGGTGATCTTCATCTCCAATGAAGATGCTTTTAAAAGTCCCAATAACCATGATTTTAATTGGATTGATAATGTAAAATTATTATGTAACCATTAAGCTCATAAAATATTTTGTGAAAAAAACTCATAAAATAT
Coding sequences of Glyma15g16041
>Glyma15g16041.1   sequence type=CDS   gene model=Glyma15g16041   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTGTTTAATCAAAAACAAAATGGTGTTTGTGGAAAAGATACAACAGCTCACAAATATTCCATCTGAACCAACATGGAATATCAGGCATCATCTTCCTCCTTCAAATTGGCCAGTTGAAGGCAATGTAGATATCAAAGACTTGCAGGTTAGATATCATCTAAACACTCCTCTGGTTCTTAAAGGCATTAGCATTAGTGGAGGTGAAAAGGTTGGTGTTGTTGGTCGAACTGGGAGCGAAAAGTCAACTTTAATTCAAGTATTCTTTAGGCTGGTGGAACCTTCAAGAGGGAAAATAACAATTGATGGTATTGAAATATTCGCTTTGGGGCTTCATGATCTTAGATCACGGTTTGGTATCATTCCTCAGGAGCTGATCCTTTTTGTGTATGGATGA

>Glyma15g16041.2   sequence type=CDS   gene model=Glyma15g16041   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTGTTTAATCAAAAACAAAATGGTGTTTGTGGAAAAGATACAACAGCTCACAAATATTCCATCTGAACCAACATGGAATATCAGGCATCATCTTCCTCCTTCAAATTGGCCAGTTGAAGGCAATGTAGATATCAAAGACTTGCAGGTTAGATATCATCTAAACACTCCTCTGGTTCTTAAAGGCATTAGCATTAGTGGAGGTGAAAAGGTTGGTGTTGTTGGTCGAACTGGGAGCGAAAAGTCAACTTTAATTCAAGTATTCTTTAGGCTGGTGGAACCTTCAAGAGGGAAAATAACAATTGATGACCTTGTGGGAGCTACGAGAACCCAAGGGAATGGGGACATGAAAAAAAAATCCCCCATGATGGGATTTGGGAACACGAAGGGATGA
Predicted protein sequences of Glyma15g16041
>Glyma15g16041.1   sequence type=predicted peptide   gene model=Glyma15g16041   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSCLIKNKMVFVEKIQQLTNIPSEPTWNIRHHLPPSNWPVEGNVDIKDLQVRYHLNTPLVLKGISISGGEKVGVVGRTGSEKSTLIQVFFRLVEPSRGKITIDGIEIFALGLHDLRSRFGIIPQELILFVYG*

>Glyma15g16041.2   sequence type=predicted peptide   gene model=Glyma15g16041   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSCLIKNKMVFVEKIQQLTNIPSEPTWNIRHHLPPSNWPVEGNVDIKDLQVRYHLNTPLVLKGISISGGEKVGVVGRTGSEKSTLIQVFFRLVEPSRGKITIDDLVGATRTQGNGDMKKKSPMMGFGNTKG*






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