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Report for Sequence Feature Glyma15g16030

Feature Type:gene_model
Chromosome:Gm15
Start:12350866
stop:12354851
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g16030
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G15920AT Annotation by Michelle Graham. TAIR10: Nodulin MtN3 family protein | chr4:9030742-9033343 REVERSE LENGTH=241 SoyBaseE_val: 1.00E-93ISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009750GO-bp Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005887GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0051119GO-mf Annotation by Michelle Graham. GO Molecular Function: sugar transmembrane transporter activity SoyBaseN/AISS
KOG1623 KOG Multitransmembrane protein JGI ISS
PTHR10791Panther STROMAL CELL PROTEIN/NODULIN MTN3-RELATED JGI ISS
PF03083PFAM MtN3/saliva family JGI ISS
UniRef100_C6TKW0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TKW0_SOYBN SoyBaseE_val: 1.00E-176ISS
UniRef100_Q84WN3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Bidirectional sugar transporter SWEET17 n=1 Tax=Arabidopsis thaliana RepID=SWT17_ARATH SoyBaseE_val: 9.00E-91ISS

Proteins Associated with Glyma15g16030
LocusGene SymbolProtein Name
SWEET40 sucrose transporter gene 40
SWEET40 sucrose effluxer gene 40

Expression Patterns of Glyma15g16030
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g16030 not represented in the dataset
Glyma15g16030 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g16030
ParalogEvidenceComments
Glyma09g04840 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g16030 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g149800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g16030
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g16030
>Glyma15g16030.1   sequence type=CDS   gene model=Glyma15g16030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGATGCAAGTTTCTTTGTTGGAGTCATAGGCAACATCATCTCAATTCTCATGTTTCTTTCTCCTGTACCTACGTTTTGGAAAATAAAGAAGCAAGGATCTACCGAAGATTTCTCAAGCCTTCCTTACATTTGCACATTGCTTAATTGTTCCCTGTGGACTTACTATGGAATCATAAACGCTAGAGAGTATCTGGTGGCTACTGTTAATGGCTTTGGCATTGTGGTGGAGACAATCTATGTTATTCTATTCCTCATATATGCTCCAAAAGGGAGAAGGGGTAGAACTGCCATTTTGGCTGTGATTTTGGATGTGGCAATCTTGGCAGCAGCAGTAGTTATTACTCAATTAGCATTTCAAGGAAAAGCTCGTAGTGGTGCTGTTGGTGTTATGGGAGCAGGCTTGAACATTGTTATGTATTTCTCACCTCTCTCTGCCATGAAAACAGTGGTGAAGACAAAAAGCGTGGAGTATATGCCATTCTTGCTTTCTTTTTTCTTCTTTTTAAACGGTGGCGTTTGGTTGTTGTATGCTGTTCTTGTTCGTGATGTTATCCTCGGGGTGCCAAACGGTACTGGATTTTTACTGGGAGCGATGCAATTAGTGCTATACGCAATCTACAGAAATGGGAAGCCTAGTTCAAATAACAGATTAGAAGAAGGATTGCAACATGAGCCTCTCATCTCACAGCCTAATAAGGAGTCACATCAGATAAGGGAAGACAGGCCCATCTAG
Predicted protein sequences of Glyma15g16030
>Glyma15g16030.1   sequence type=predicted peptide   gene model=Glyma15g16030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADASFFVGVIGNIISILMFLSPVPTFWKIKKQGSTEDFSSLPYICTLLNCSLWTYYGIINAREYLVATVNGFGIVVETIYVILFLIYAPKGRRGRTAILAVILDVAILAAAVVITQLAFQGKARSGAVGVMGAGLNIVMYFSPLSAMKTVVKTKSVEYMPFLLSFFFFLNGGVWLLYAVLVRDVILGVPNGTGFLLGAMQLVLYAIYRNGKPSSNNRLEEGLQHEPLISQPNKESHQIREDRPI*






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