Report for Sequence Feature Glyma15g16000
Feature Type: gene_model
Chromosome: Gm15
Start: 12337020
stop: 12338452
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g16000
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G06868 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:2167872-2168981 FORWARD LENGTH=369
SoyBase E_val: 1.00E-57 ISS
UniRef100_I1MGM8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGM8_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q01L40 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: H0502B11.11 protein n=3 Tax=Oryza sativa RepID=Q01L40_ORYSA
SoyBase E_val: 1.00E-20 ISS
Expression Patterns of Glyma15g16000
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g16000
Paralog Evidence Comments
Glyma09g04850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g16000 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g149700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g16000
Coding sequences of Glyma15g16000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g16000.1 sequence type=CDS gene model=Glyma15g16000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGCAGGAGTAGGAGGAGGAAGGGTAGGTGGTGCATGCGACAACGAAATTAGCGACGGAATGCAATGCATGAACCACCCTCACAACAACAGCAACAACAATCCCGGTGGGATTTGCGCCTTCTGTCTCCAAGATAAACTCCGCAACCTTCTCTCTTCTTCACCTCCTCTTTCTTCCTCGTCTTCTCCTTCCCCTTCTTTCACTCCTCCACCTCCTCCCTCTGTTAAAACCGACCACGACCACAACACGCGCTCTCGCCTCCCCTTCCTCGTACCCAAGAAAAACAACAACAAAAAACCCTCCTCCTACACCAACATTTCTTCATCAGCTAATATCATTTTCAAACGCAGCAAGTCCACTGCCACACCCAAAAGGAACCAGTTTCTCGAGGAGAAGGACTTCAGTCCCAGAAAAAGAAACGGTTTTTGGTCTTTCCTCTATCCTTCTTCTTCAAAGGAAGCTAAGAGCTTTGGTCCAAATGGTAAGTACAGAGGCAAGTGCTTGGGAAAAAAGAGTGATCACGTGATTATTGTGGAAGAGGACAAGTGTTTGAGCTCTTCTTCTTCTTCTTCTTCTAAGGTTTCGAGATCTAGATCTGTTGGGTGTGGTAGCAGAAGCTTCTCCAGTGATTTCTTCGAGAGGATCTCTTCTGGCCTCGGCGACTGCACTCTACGGAGAGTGGAGTCTCAGCGTGAAGGAGGAAAACCTAAGCTAGCTGCTTCTGCTAATACTATGAACCATTGCATGAAGGAAAGAGTGAGATGTGGAGGAATATTCAGTGGCTTCGTTATGAATTCGTCTTCATCAACAACGTCTTCTTCGTCTTGGGTTTCTTCTTCTGTTGATGATGGCAGAGGAAGGAGTTGGGGTTGGGCGTTTGCTAGTCCTATGAGAGCTTTCACCACCAAAGGGTCTCCTCCTTCTTCTTCTTCGAAGAGAGATGCTTCTGATAAGAACAACGCCACGCCTAACTTATCAGCCATTCCTACCTTGCTCACTGTTAGAGGCTGA
Predicted protein sequences of Glyma15g16000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g16000.1 sequence type=predicted peptide gene model=Glyma15g16000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEAGVGGGRVGGACDNEISDGMQCMNHPHNNSNNNPGGICAFCLQDKLRNLLSSSPPLSSSSSPSPSFTPPPPPSVKTDHDHNTRSRLPFLVPKKNNNKKPSSYTNISSSANIIFKRSKSTATPKRNQFLEEKDFSPRKRNGFWSFLYPSSSKEAKSFGPNGKYRGKCLGKKSDHVIIVEEDKCLSSSSSSSSKVSRSRSVGCGSRSFSSDFFERISSGLGDCTLRRVESQREGGKPKLAASANTMNHCMKERVRCGGIFSGFVMNSSSSTTSSSSWVSSSVDDGRGRSWGWAFASPMRAFTTKGSPPSSSSKRDASDKNNATPNLSAIPTLLTVRG*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
