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Report for Sequence Feature Glyma15g15900

Feature Type:gene_model
Chromosome:Gm15
Start:12223714
stop:12238042
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g15900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G16630AT Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:5662660-5667261 REVERSE LENGTH=794 SoyBaseE_val: 0ISS
GO:0003002GO-bp Annotation by Michelle Graham. GO Biological Process: regionalization SoyBaseN/AISS
GO:0007018GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule-based movement SoyBaseN/AISS
GO:0007155GO-bp Annotation by Michelle Graham. GO Biological Process: cell adhesion SoyBaseN/AISS
GO:0009887GO-bp Annotation by Michelle Graham. GO Biological Process: organ morphogenesis SoyBaseN/AISS
GO:0009888GO-bp Annotation by Michelle Graham. GO Biological Process: tissue development SoyBaseN/AISS
GO:0010014GO-bp Annotation by Michelle Graham. GO Biological Process: meristem initiation SoyBaseN/AISS
GO:0010090GO-bp Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010638GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization SoyBaseN/AISS
GO:0016049GO-bp Annotation by Michelle Graham. GO Biological Process: cell growth SoyBaseN/AISS
GO:0016926GO-bp Annotation by Michelle Graham. GO Biological Process: protein desumoylation SoyBaseN/AISS
GO:0022402GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle process SoyBaseN/AISS
GO:0033043GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of organelle organization SoyBaseN/AISS
GO:0033044GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization SoyBaseN/AISS
GO:0045010GO-bp Annotation by Michelle Graham. GO Biological Process: actin nucleation SoyBaseN/AISS
GO:0045595GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation SoyBaseN/AISS
GO:0048449GO-bp Annotation by Michelle Graham. GO Biological Process: floral organ formation SoyBaseN/AISS
GO:0048589GO-bp Annotation by Michelle Graham. GO Biological Process: developmental growth SoyBaseN/AISS
GO:0048765GO-bp Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation SoyBaseN/AISS
GO:0050665GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005795GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi stack SoyBaseN/AISS
GO:0005874GO-cc Annotation by Michelle Graham. GO Cellular Compartment: microtubule SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003777GO-mf Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
KOG0246 KOG Kinesin-like protein JGI ISS
PTHR24115Panther FAMILY NOT NAMED JGI ISS
PTHR24115:SF79Panther SUBFAMILY NOT NAMED JGI ISS
PF00225PFAM Kinesin motor domain JGI ISS
UniRef100_I1MGL9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGL9_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q6WJ05UniRef Annotation by Michelle Graham. Most informative UniRef hit: Central motor kinesin 1 n=1 Tax=Gossypium hirsutum RepID=Q6WJ05_GOSHI SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g15900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g15900
ParalogEvidenceComments
Glyma09g04960 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g15900 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g148800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g15900
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g15900
>Glyma15g15900.1   sequence type=CDS   gene model=Glyma15g15900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGCAGGGCAATGCCGCCGCCGCAGCAGCGCTGCTGGACCACGGCGGCGATGCCGGCGACGCCGTAATGGCGCGGTGGTTGCAGTCCGCTGGCCTGCAGCATCTAGCCTCTCCCCTCGCTTCCACCGCCATCGATCATCGCCTCCTCCCTAACCTTCTCATGCAGGGTTATGGAGCACAGTCTACTGAGGAGAAGCAGAGGCTTTTAAAGTTAATGAGAAACCTCAATTTTAATGGGGAATCTGGTTCGGAGCCATATACACCCACCACTCAATCTTTAGGTGTGGCTGGGTCGGATGGGTTTTATTCTCCTGAGTTCAGGGGGGAGTTTGGAGCTGGGCTTTTGGATCTTCATGCTATGGATGATACAGAGCTTTTGTCTGAGCATGTAGTTTCAGAACCTTTTGAGCCATCACCCTTCATGCCTGGAGATACTAGAGTATTTGAAGACGATTTCGATCCAATTAACAGCAAGCTGGAAAGCGGGGAAGCAGATACTGATGCATCAATTTCCTTACCTATGAATAGCACAAGGGAAAATAATGTTGCTAAGATTAAAGTTGTGGTACGCAAAAGGCCTTTAAACAAGAAGGAGCTTGCTAAGAAGGAGGATGATGTTGTAACCGTAACTGGCAATGCATATTTGACAGTCCATGAACCGAAACTAAAGGTTGATTTGACAGCTTATGTGGAGAAGCATGAGTTTTGTTTTGATGCTGTGCTTGATGAGCATGTGACCAATGATGAAGTATACCGAAGCACAGTTGAACCAATTATTCCTACAATATTTGAGCGAACCAAAGCTACCTGTTTCGCTTATGGTCAGACAGGAAGTGGCAAAACATACACAATGCAACCTTTACCACTCAGAGCTGCAGAAGACCTTGTTCGACAGTTGCATCAGCCAGTTTACCGGGATCAGAGATTTAAATTGTGGCTTAGCTACTTTGAGATATATGGTGGAAAACTTTATGATCTTCTTAGTGACAGAAAGAAACTTTGCATGAGGGAAGATGGACGGCAGCAAGTTTGTATTGTAGGACTGCAAGAATTTGAAGTTTGTGATGTACTAATTGTCAAAGAATTCATTGAAAAGGGAAGTGCTGCAAGAAGTACAGGATCCACTGGTGCTAATGAGGAGTCCTCCAGGTCACATGCTATCTTGCAACTGGCTGTAAAGAAGCACAGTGAAGTTAAAGCGAGCAAGCGAAACAATGATGGGAATGAGGCAAGAAGTGGGAAGGTTGTGGGAAAAATTTCTTTTATTGATCTTGCTGGAAGTGAACGAGGTGCTGACACTACTGATAACGATCGTCAGACACGGATTGAAGGAGCAGAAATCAATAAGAGCCTTTTGGCTTTGAAGGAGTGTATTCGTGCTTTAGACAATGACCAGATCCATATTCCATTTCGAGGAAGCAAACTTACAGAAGTGCTTCGTGACTCCTTTGTGGGTAATTCAAAGACTGTTATGATCTCTTGTATATCTCCAGGTGCCGGGTCATGTGAACACACACTTAATACCTTGAGATATGCAGATCGGGTTAAAAGTCTATCCAAAAGTGGGAATCCTAGAAAAGACCAGGTCCCAAATGCTGTACCACAAACTAATAATAAGGAGGTTTCATCCACATCATCCTTTCCAGCCAGTGCTGGTGCAGAGGATTTGAATGATCAACGTCAAGAGAAAACAATGGATATGGGCAGGAAATTTGTTGAAAAGGAAAATTCTTTGCACAGCTCTGCAGCAGCTGCTGTTGACAAACAGCCATTAAGTTATTCTTCAAATTACCTATCAAATGGGGGAGAGGAAAAAGGCTTTCCTTCAGCTTCAGTGGACAGGGAGAGGTATGAAGTGAAGAACTCACATGGTGACTCTACCAGTCAAAAGATGAACTCTTATTCACAAAGTGATACGGATGAGAAAGTGCAAAAGGTGTCTCCCCCGCGCAGAAAAGGCTATAAGGATGAAAAATCCGAAAGGCCTGCTAACTGGATGAAAAAAGATGCCAACGGTTCTGATCTCTTCACTACAAGCTCAAAGCAGCAGAGCACAGGGAATTATGGGACTGTGTCTAAGGATGAAAAGTCTGAAAGGCCTGCAAACTGGATGAAAAGGGATGCCAATGGTTCTGATCTTGTCACTACAAGCTCCAAGCAGAGCACCGGGAGTTATAGCACTTTGTCTAAGGATGAAAAGTCTGAAAGGCCTGCAAACTGGATTAAAAGGGATGCCAACGGCTCTGATACCTTCACTACAAGCTCCAAGCAGCAGAGCACCGGGAATTATAACAATATCACCACTGGATCCAGGCTTAATGAAACAGAATCCTCTCCTGATGGGAATGTCAGTGCAGTACTTGAGGAGGAAGAAGCGCTAATTGCTGCTCATAGGAAAGAAATTGAAGATACAATGGAGATTGTTCGTGAAGAAATGAAACTCTTGGCAGAGGTGGACCAACCGGGAAGCCTTATTGACAACTATGTAACCAAATTGAGCTTTGTGCTTTCTCGCAAAGCAGCTAGTCTCGTGGGTCTTCAAGCTCGTCTTGCAAGATTCCAACATCGACTAAAAGAGCAAGAAATTCTAAGTAGAAAAAGAGTTCCCCGTCAATAA
Predicted protein sequences of Glyma15g15900
>Glyma15g15900.1   sequence type=predicted peptide   gene model=Glyma15g15900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPQGNAAAAAALLDHGGDAGDAVMARWLQSAGLQHLASPLASTAIDHRLLPNLLMQGYGAQSTEEKQRLLKLMRNLNFNGESGSEPYTPTTQSLGVAGSDGFYSPEFRGEFGAGLLDLHAMDDTELLSEHVVSEPFEPSPFMPGDTRVFEDDFDPINSKLESGEADTDASISLPMNSTRENNVAKIKVVVRKRPLNKKELAKKEDDVVTVTGNAYLTVHEPKLKVDLTAYVEKHEFCFDAVLDEHVTNDEVYRSTVEPIIPTIFERTKATCFAYGQTGSGKTYTMQPLPLRAAEDLVRQLHQPVYRDQRFKLWLSYFEIYGGKLYDLLSDRKKLCMREDGRQQVCIVGLQEFEVCDVLIVKEFIEKGSAARSTGSTGANEESSRSHAILQLAVKKHSEVKASKRNNDGNEARSGKVVGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPGAGSCEHTLNTLRYADRVKSLSKSGNPRKDQVPNAVPQTNNKEVSSTSSFPASAGAEDLNDQRQEKTMDMGRKFVEKENSLHSSAAAAVDKQPLSYSSNYLSNGGEEKGFPSASVDRERYEVKNSHGDSTSQKMNSYSQSDTDEKVQKVSPPRRKGYKDEKSERPANWMKKDANGSDLFTTSSKQQSTGNYGTVSKDEKSERPANWMKRDANGSDLVTTSSKQSTGSYSTLSKDEKSERPANWIKRDANGSDTFTTSSKQQSTGNYNNITTGSRLNETESSPDGNVSAVLEEEEALIAAHRKEIEDTMEIVREEMKLLAEVDQPGSLIDNYVTKLSFVLSRKAASLVGLQARLARFQHRLKEQEILSRKRVPRQ*






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