Glyma15g15830 - SoyBase

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Report for Sequence Feature Glyma15g15830

Feature Type:	gene_model
Chromosome:	Gm15
Start:	12168818
stop:	12176668
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g15830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49020	AT	Annotation by Michelle Graham. TAIR10: protein arginine methyltransferase 4A \| chr5:19871341-19874683 FORWARD LENGTH=528	SoyBase	E_val: 0	ISS
GO:0006406	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0009886	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-embryonic morphogenesis	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009933	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem structural organization	SoyBase	N/A	ISS
GO:0010074	GO-bp	Annotation by Michelle Graham. GO Biological Process: maintenance of meristem identity	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0010182	GO-bp	Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0016458	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0016570	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone modification	SoyBase	N/A	ISS
GO:0019915	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid storage	SoyBase	N/A	ISS
GO:0019919	GO-bp	Annotation by Michelle Graham. GO Biological Process: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	SoyBase	N/A	ISS
GO:0034968	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone lysine methylation	SoyBase	N/A	ISS
GO:0034970	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-R2 methylation	SoyBase	N/A	ISS
GO:0034971	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-R17 methylation	SoyBase	N/A	ISS
GO:0034972	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-R26 methylation	SoyBase	N/A	ISS
GO:0048449	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ formation	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0048507	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem development	SoyBase	N/A	ISS
GO:0050826	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to freezing	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0008469	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histone-arginine N-methyltransferase activity	SoyBase	N/A	ISS
GO:0016277	GO-mf	Annotation by Michelle Graham. GO Molecular Function: [myelin basic protein]-arginine N-methyltransferase activity	SoyBase	N/A	ISS
GO:0035241	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein-arginine omega-N monomethyltransferase activity	SoyBase	N/A	ISS
GO:0035242	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein-arginine omega-N asymmetric methyltransferase activity	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
GO:0046982	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity	SoyBase	N/A	ISS
KOG1500	KOG	Protein arginine N-methyltransferase CARM1	JGI		ISS
PTHR11006	Panther	PROTEIN ARGININE N-METHYLTRANSFERASE	JGI		ISS
PTHR11006:SF10	Panther	PROTEIN ARGININE N-METHYLTRANSFERASE 1	JGI		ISS
PF05185	PFAM	PRMT5 arginine-N-methyltransferase	JGI		ISS
UniRef100_G7JLH5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein arginine N-methyltransferase n=1 Tax=Medicago truncatula RepID=G7JLH5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MGL5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGL5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g15830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g15830

Paralog	Evidence	Comments
Glyma09g05000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g15830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g148200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g15830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g15830

Limit To All Plant Sequences

>Glyma15g15830.1   sequence type=CDS   gene model=Glyma15g15830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGAGGGAGGAGCGATAATGGAGGATTCGGCGGCGCAGAAGAGGAAGCAGCAAGAGTTTGCTCTAGCGTCGGTTTCCGAGGTGTCTTCGGCTCCTTCTTCTGCTTCGCCGGGGGTTGCTCTCTTTGCTGGTGACCGTCTTCAAATTAGGAACGAATCTCACCGTGTTGCTCTCAATGCACACCTTTCAGATATTCAGCTATTCAGATTAGGTCCTATTGAATCGGTTTGCATGGTGGAAGGGTCTGAGGCTGACAAACAGACATCGTATTCCAGTGGAGTCGCTATACAGTTTAGAAATGAGGAAGAGAGTGAGGCCTTCCATTGTGTATTCCAACAATGGAAGAAGGGATTCGATGTTCAAGGAGGAAACTTACCTAATGGAACTGATGTAATAACTTCTAAAAGCAAATTTGATGAAAAGATAGAGCCATCTTCTGCAAAAATGTATTTTCATTATTACGGACAACTTCTGCATCAGCAAAATATGTTGCAGGACTATGTGAGGACAGGAACCTATTATGCTGCAGTTCTTGAGAATCGTGCAGATTTCGTAGGTCGTGTAGTAGTTGATGTTGGTGCTGGTAGCGGCATTTTGTCACTATTTGCTGCCCAGGCTGGTGCAAAACATGTTTATGCCGTGGAAGCATCTGAAATGGCAGAATATGCACGAAAACTTGTAGCTGGGAACCCAATACTGGGTCAACGAATTACAGTTATTAAAGGCAAAGTTGAGGATGTTGAATTGCCAGAGAAAGCTGATATTCTAATCTCTGAGCCCATGGGCACCTTGTTAGTTAACGAAAGAATGCTGGAGTCTTATGTCATTGCCAGAGATAGGTTTCTCATCCCTAATGGGAAAATGTTTCCTACAGTGGGAAGGATTCACATGGCTCCTTTCAGTGATGAATATTTGTTTGTTGAAATTGCTAATAAGGCCCTGTTTTGGCAGCAGCAAAACTATTATGGTGTTGATTTGACGCCCTTACATGGGACTGCCTTTCAAGGATACTTTTCTCAGCCTGTGGTGGATGCTTTTGATCCAAGGTTGTTAATAGCTGCTCCTATGTTCCATGTGTTAGACTTTACCAAAATAAAGGAAGAAGAGCTGTATGAAATTGACATTCCTCTCAGATTCACAGCCACTGTGGGTGCCAGGCTACATGGGTTGGCATGTTGGTTTGATGTACTGTTCAATGGAAGTACTGCACGAAGGTGGCTTACCACTGCCCCTGGTTCACCTACAACCCACTGGTATCAGTTACGCTGTGTTCTCTCGCAGCCAATATATGTCATGGCAGGACAAGAAATTACTGGCAGGATGCACTTGATTGCTCACACTGCTCAGAGTTATACGATCTTTTTAACATTGTCAGCTAAAACGTGGGGTCCTGGTGCTGAACAAGGAGGGATTCTTCAAACATCATCCTGTAAACTTGATCTGAAAGAACCTTACTATAGAATGTCTCAACCACAAGCTTATCCATTAACCCAAGATCAGCAACCTCAACCGTTTTTACAGACACAGGATATAGACATCCAATCTCAAGATTTGGATGAAGTGGAGATAATGCAACAGCCTTCGCCTAAGTCGTGTGCTCAGATTGACTCCCTCATGCAGAATGCATCATAA

Predicted protein sequences of Glyma15g15830

Limit To All Plant Sequences

>Glyma15g15830.1   sequence type=predicted peptide   gene model=Glyma15g15830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEGGAIMEDSAAQKRKQQEFALASVSEVSSAPSSASPGVALFAGDRLQIRNESHRVALNAHLSDIQLFRLGPIESVCMVEGSEADKQTSYSSGVAIQFRNEEESEAFHCVFQQWKKGFDVQGGNLPNGTDVITSKSKFDEKIEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVLENRADFVGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLVAGNPILGQRITVIKGKVEDVELPEKADILISEPMGTLLVNERMLESYVIARDRFLIPNGKMFPTVGRIHMAPFSDEYLFVEIANKALFWQQQNYYGVDLTPLHGTAFQGYFSQPVVDAFDPRLLIAAPMFHVLDFTKIKEEELYEIDIPLRFTATVGARLHGLACWFDVLFNGSTARRWLTTAPGSPTTHWYQLRCVLSQPIYVMAGQEITGRMHLIAHTAQSYTIFLTLSAKTWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYPLTQDQQPQPFLQTQDIDIQSQDLDEVEIMQQPSPKSCAQIDSLMQNAS*

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