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Report for Sequence Feature Glyma15g15770

Feature Type:gene_model
Chromosome:Gm15
Start:12127209
stop:12130712
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g15770
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G15790AT Annotation by Michelle Graham. TAIR10: unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 411 Blast hits to 380 proteins in 121 species: Archae - 4; Bacteria - 107; Metazoa - 85; Fungi - 29; Plants - 59; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). | chr4:8982390-8984069 FORWARD LENGTH=147 SoyBaseE_val: 7.00E-46ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
UniRef100_I1MGK8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MGK8_SOYBN SoyBaseE_val: 1.00E-137ISS

Expression Patterns of Glyma15g15770
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g15770
ParalogEvidenceComments
Glyma09g05060 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g15770 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g147300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g15770
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma15g15770
>Glyma15g15770.2   sequence type=transcript   gene model=Glyma15g15770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAAGAAACAAGAAAGAATTTATTTATTTAAAAAAAAATGAAGCAAAGTTGGTGGTATAAATAGGGATTTCAAGCAAACTTTTATGCACGTCGCTGGCAAATTTCGATATCCCACGCAACGTACTAGTACTACCCCCAACACAACACTCACCAAACCACGCTCCGATTCAAATTCCAACTCCGAATCAAACCCTAGTACAACAATCCAACGAAACCTTCTTCTTCTCAATTCTCCGATCCCATCCTCAATGGAAAACCCGGATTCCTCTCTTCCTCTCTCCATCAAGGAGAACGTCACTCCCATTACCTCTAAAATCGCGGAACTTAATGAATCGAGATCGGAGCTTCTGGGCAGAGTTCAGAGTTTGAAACAGGATTTGCAAAGTTGGAGGTCGAAGTTAGATACACAAGTCAAGGTCTATCGCGACGAGCTGTCAGAACTTAAGAAAACACTTAATGTTGAAGTGGACCAACTTCGAGCAGAATTTCAAGATCTGAGGACTACCCTTCAGCAGCAACAAGAGGATGTCACTGCTAGCTTAAGAAACTTGGGGCTTCAGGATGCCTCAGATGTCAAGCATGCTCCGTTGCAGGAGACAAAGATTGAAAAAATTGTCAAGGAAGAACAGGTGGTGGTACCTGAAGAAGATAATAGCAGCAAAGTAGCTGAAACTTAAATAGCTTTTTAATTTGAGTATTTGCTGCTCGCTGTGTACACCCTAGAGAAGCTGAATGACTCTGTATTATGGTAGATATTTGATGTGTTTGATTACTACTGTTGGGTATAATGCGGGACTTAAGAATCAATGGTAAATTTCCCGTTACCCTTCCTCGGGTATAATCGATATTAATTGAACAAATTATGGTATGCTTTCATATTCTTCT

>Glyma15g15770.3   sequence type=transcript   gene model=Glyma15g15770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAAGAAACAAGAAAGAATTTATTTATTTAAAAAAAAATGAAGCAAAGTTGGTGGTATAAATAGGGATTTCAAGCAAACTTTTATGCACGTCGCTGGCAAATTTCGATATCCCACGCAACGGTATCTCCTTATTCGTGTTTTTTAAAAATTTGAGCTGGTTTTTTTGTCGCGTTTGTTTATAACGTTGGTGTTTCTTGACTCGTGTACTAGTACTAGTACTACCCCCAACACAACACTCACCAAACCACGCTCCGATTCAAATTCCAACTCCGAATCAAACCCTAGTACAACAATCCAACGAAACCTTCTTCTTCTCAATTCTCCGATCCCATCCTCAATGGAAAACCCGGATTCCTCTCTTCCTCTCTCCATCAAGAAGGAGAACGTCACTCCCATTACCTCTAAAATCGCGGAACTTAATGAATCGAGATCGGAGCTTCTGGGCAGAGTTCAGAGTTTGAAACAGGATTTGCAAAGTTGGAGGTCGAAGTTAGATACACAAGTCAAGGTCTATCGCGACGAGCTGTCAGAACTTAAGAAAACACTTAATGTTGAAGTGGACCAACTTCGAGCAGAATTTCAAGATCTGAGGACTACCCTTCAGCAGCAACAAGAGGATGTCACTGCTAGCTTAAGAAACTTGGGGCTTCAGGATGCCTCAGATGTCAAGCATGCTCCGTTGCAGGAGACAAAGATTGAAAAAATTGTCAAGGAAGAACAGGTGGTGGTACCTGAAGAAGATAATAGCAGCAAAGTAGCTGAAACTTAAATAGCTTTTTAATTTGAGTATTTGCTGCTCGCTGTGTACACCCTAGAGAAGCTGAATGACTCTGTATTATGGTAGATATTTGATGTGTTTGATTACTACTGTTGGGTATAATGCGGGACTTAAGAATCAATGGTAAATTTCCCGTTACCCTTCCTCGGGTATAATCGATATTAATTGAACAAATTATGGTATGCTTTCATATTCTTCTAACTGAGTTGCCAGCAAAGATTAAGGTTCTGTTAAACATTTTCATAAAAAGGTAGA
Coding sequences of Glyma15g15770
>Glyma15g15770.1   sequence type=CDS   gene model=Glyma15g15770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACGTCGCTGGCAAATTTCGATATCCCACGCAACGTACTAGTACTACCCCCAACACAACACTCACCAAACCACGCTCCGATTCAAATTCCAACTCCGAATCAAACCCTAGTACAACAATCCAACGAAACCTTCTTCTTCTCAATTCTCCGATCCCATCCTCAATGGAAAACCCGGATTCCTCTCTTCCTCTCTCCATCAAGAAGGAGAACGTCACTCCCATTACCTCTAAAATCGCGGAACTTAATGAATCGAGATCGGAGCTTCTGGGCAGAGTTCAGAGTTTGAAACAGGATTTGCAAAGTTGGAGGTCGAAGTTAGATACACAAGTCAAGGTCTATCGCGACGAGCTGTCAGAACTTAAGAAAACACTTAATGTTGAAGTGGACCAACTTCGAGCAGAATTTCAAGATCTGAGGACTACCCTTCAGCAGCAACAAGAGGATGTCACTGCTAGCTTAAGAAACTTGGGGCTTCAGGATGCCTCAGATGTCAAGCATGCTCCGTTGCAGGAGACAAAGATTGAAAAAATTGTCAAGGAAGAACAGGTGGTGGTACCTGAAGAAGATAATAGCAGCAAAGTAGCTGAAACTTAA

>Glyma15g15770.2   sequence type=CDS   gene model=Glyma15g15770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACGTCGCTGGCAAATTTCGATATCCCACGCAACGTACTAGTACTACCCCCAACACAACACTCACCAAACCACGCTCCGATTCAAATTCCAACTCCGAATCAAACCCTAGTACAACAATCCAACGAAACCTTCTTCTTCTCAATTCTCCGATCCCATCCTCAATGGAAAACCCGGATTCCTCTCTTCCTCTCTCCATCAAGGAGAACGTCACTCCCATTACCTCTAAAATCGCGGAACTTAATGAATCGAGATCGGAGCTTCTGGGCAGAGTTCAGAGTTTGAAACAGGATTTGCAAAGTTGGAGGTCGAAGTTAGATACACAAGTCAAGGTCTATCGCGACGAGCTGTCAGAACTTAAGAAAACACTTAATGTTGAAGTGGACCAACTTCGAGCAGAATTTCAAGATCTGAGGACTACCCTTCAGCAGCAACAAGAGGATGTCACTGCTAGCTTAAGAAACTTGGGGCTTCAGGATGCCTCAGATGTCAAGCATGCTCCGTTGCAGGAGACAAAGATTGAAAAAATTGTCAAGGAAGAACAGGTGGTGGTACCTGAAGAAGATAATAGCAGCAAAGTAGCTGAAACTTAA

>Glyma15g15770.3   sequence type=CDS   gene model=Glyma15g15770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAACCCGGATTCCTCTCTTCCTCTCTCCATCAAGAAGGAGAACGTCACTCCCATTACCTCTAAAATCGCGGAACTTAATGAATCGAGATCGGAGCTTCTGGGCAGAGTTCAGAGTTTGAAACAGGATTTGCAAAGTTGGAGGTCGAAGTTAGATACACAAGTCAAGGTCTATCGCGACGAGCTGTCAGAACTTAAGAAAACACTTAATGTTGAAGTGGACCAACTTCGAGCAGAATTTCAAGATCTGAGGACTACCCTTCAGCAGCAACAAGAGGATGTCACTGCTAGCTTAAGAAACTTGGGGCTTCAGGATGCCTCAGATGTCAAGCATGCTCCGTTGCAGGAGACAAAGATTGAAAAAATTGTCAAGGAAGAACAGGTGGTGGTACCTGAAGAAGATAATAGCAGCAAAGTAGCTGAAACTTAA
Predicted protein sequences of Glyma15g15770
>Glyma15g15770.1   sequence type=predicted peptide   gene model=Glyma15g15770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHVAGKFRYPTQRTSTTPNTTLTKPRSDSNSNSESNPSTTIQRNLLLLNSPIPSSMENPDSSLPLSIKKENVTPITSKIAELNESRSELLGRVQSLKQDLQSWRSKLDTQVKVYRDELSELKKTLNVEVDQLRAEFQDLRTTLQQQQEDVTASLRNLGLQDASDVKHAPLQETKIEKIVKEEQVVVPEEDNSSKVAET*

>Glyma15g15770.2   sequence type=predicted peptide   gene model=Glyma15g15770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHVAGKFRYPTQRTSTTPNTTLTKPRSDSNSNSESNPSTTIQRNLLLLNSPIPSSMENPDSSLPLSIKENVTPITSKIAELNESRSELLGRVQSLKQDLQSWRSKLDTQVKVYRDELSELKKTLNVEVDQLRAEFQDLRTTLQQQQEDVTASLRNLGLQDASDVKHAPLQETKIEKIVKEEQVVVPEEDNSSKVAET*

>Glyma15g15770.3   sequence type=predicted peptide   gene model=Glyma15g15770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENPDSSLPLSIKKENVTPITSKIAELNESRSELLGRVQSLKQDLQSWRSKLDTQVKVYRDELSELKKTLNVEVDQLRAEFQDLRTTLQQQQEDVTASLRNLGLQDASDVKHAPLQETKIEKIVKEEQVVVPEEDNSSKVAET*






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