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Report for Sequence Feature Glyma15g15700

Feature Type:gene_model
Chromosome:Gm15
Start:12076731
stop:12078191
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g15700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G07230AT Annotation by Michelle Graham. TAIR10: non-specific phospholipase C1 | chr1:2220509-2222778 REVERSE LENGTH=533 SoyBaseE_val: 8.00E-45ISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016788GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds SoyBaseN/AISS
PF04185PFAM Phosphoesterase family JGI ISS
UniRef100_B9SI13UniRef Annotation by Michelle Graham. Most informative UniRef hit: Hydrolase, acting on ester bonds, putative n=1 Tax=Ricinus communis RepID=B9SI13_RICCO SoyBaseE_val: 9.00E-44ISS
UniRef100_UPI000233E9F9UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E9F9 related cluster n=1 Tax=unknown RepID=UPI000233E9F9 SoyBaseE_val: 1.00E-56ISS

Expression Patterns of Glyma15g15700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g15700 not represented in the dataset
Glyma15g15700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g15700 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma15g15700
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g15700
>Glyma15g15700.1   sequence type=CDS   gene model=Glyma15g15700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACAACGAGAATGACCTCTCCTTCGGCGTCTACAACGGGAAGCTGCTAAACTACGTTGTGAGGTACTTCGATGTGGAGGTTTTTTCGACGAATGATGACCACCCCTCGCAAGACATGGCGGTCGGGGAGATGTTCATGAAGGAGTGGGAGGAGATGGCGGTGCTGATTACTTATAATGAGCATGGTGGGTTTTATGATCATGTGGCGACACCGATGAAAGGGGTGCCTAACCCCGATGGGATTGTTGGGCCCCACCCTTATTACTTTTGGTTTGATAGGTTGGGGGTGAGGGTGCCCACATTTATTATCTCGCTTTGGATCGACAAGGGTATTGGTATGTGCTTTAAAGTTTTCAGATTTTTCATGTTGTGTTGTGGAACCACACCTCTGGTCAATGGAATAGAGACACTAATGACAAAGTCTTCAAATTTTCTGTCAAGCAATGATCAGAAACTTGATTACGGTGGTGGCTACATGAAGTTGCTCAGT
Predicted protein sequences of Glyma15g15700
>Glyma15g15700.1   sequence type=predicted peptide   gene model=Glyma15g15700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHNENDLSFGVYNGKLLNYVVRYFDVEVFSTNDDHPSQDMAVGEMFMKEWEEMAVLITYNEHGGFYDHVATPMKGVPNPDGIVGPHPYYFWFDRLGVRVPTFIISLWIDKGIGMCFKVFRFFMLCCGTTPLVNGIETLMTKSSNFLSSNDQKLDYGGGYMKLLS






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