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Report for Sequence Feature Glyma15g15640

Feature Type:gene_model
Chromosome:Gm15
Start:12015338
stop:12019875
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g15640
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G34770AT Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: MAGE protein (InterPro:IPR002190); Has 1274 Blast hits to 1260 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 1104; Fungi - 45; Plants - 49; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). | chr1:12746624-12748449 FORWARD LENGTH=237 SoyBaseE_val: 4.00E-103ISS
GO:0006261GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication SoyBaseN/AISS
GO:0006312GO-bp Annotation by Michelle Graham. GO Biological Process: mitotic recombination SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009560GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR11736Panther MELANOMA-ASSOCIATED ANTIGEN (MAGE ANTIGEN) JGI ISS
PTHR11736:SF6Panther MELANOMA ANTIGEN FAMILY B JGI ISS
PF01454PFAM MAGE family JGI ISS
UniRef100_B9RJL0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Melanoma-associated antigen G1, putative n=1 Tax=Ricinus communis RepID=B9RJL0_RICCO SoyBaseE_val: 8.00E-123ISS
UniRef100_C6T852UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T852_SOYBN SoyBaseE_val: 6.00E-173ISS

Expression Patterns of Glyma15g15640
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g15640
ParalogEvidenceComments
Glyma09g04540 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g15640 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g146200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g15640
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g15640
>Glyma15g15640.1   sequence type=CDS   gene model=Glyma15g15640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAATGCTGCAGAAGATTTCTCCCAATTCGGGATTTCAAAGGAGGAAAAGGATAAGCTTGTTGGGGAATTGATTAGGTACATGCTTTTCAAAACCCATCAAAATTCAGGGTGCCCCATTAAGAGAGAGGAACTCACTCAACTTGTTACGAAGAACTATCATCAGCGTAACCTTCCTACCTTTGTGATCAATGAGGCTAAGGAGAAGCTTTCCTTTGTATTTGGCTATGAAATGAGGGAGCTTCAAAGGGCCCACCCTTCTTCCAAAGCCCAGACACGGTCCTCCCAACAAAGTGTTGCGGATTCGAAATCATATATTCTCATAAGTCAACTTCCTCCTAATGTATATGAAAAATATGTTGTGGATGTTAATACTGCGCATCTATCCGGATTCACTTTTGTGATAATTAGTATTGTATATCTTGCTGGTGGCAAAATTCCAGAAGAAAATCTATGGAGCCAAATGAGGAGGATGGGTTTGGGTGAAACTGAGGCAAGTCATCCAGTCCTTGGAAATGTTAAGCAAGCATTGGAACTTCTTGTTCAGCAAAGGTATTTACAGAAAGACAAAGTTAATGGTCCTGAAGGCAATACCGTATATTATGAGCTTGCCGAGAGAGCTTTAGATGGACCCATGAACGACAGGGTTAAGGAATATATCTCTCAGATTGTGCAGGACAACACTTCAGTGGGTGCTGCCTAA
Predicted protein sequences of Glyma15g15640
>Glyma15g15640.1   sequence type=predicted peptide   gene model=Glyma15g15640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANAAEDFSQFGISKEEKDKLVGELIRYMLFKTHQNSGCPIKREELTQLVTKNYHQRNLPTFVINEAKEKLSFVFGYEMRELQRAHPSSKAQTRSSQQSVADSKSYILISQLPPNVYEKYVVDVNTAHLSGFTFVIISIVYLAGGKIPEENLWSQMRRMGLGETEASHPVLGNVKQALELLVQQRYLQKDKVNGPEGNTVYYELAERALDGPMNDRVKEYISQIVQDNTSVGAA*






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