Glyma15g15620 - SoyBase

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Report for Sequence Feature Glyma15g15620

Feature Type:	gene_model
Chromosome:	Gm15
Start:	12003510
stop:	12004499
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g15620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF00407	PFAM	Pathogenesis-related protein Bet v I family	JGI		ISS
UniRef100_H9NJ57	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bet v 1 allergen n=1 Tax=Quercus suber RepID=H9NJ57_QUESU	SoyBase	E_val: 3.00E-44	ISS
UniRef100_I1MGJ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MGJ7_SOYBN	SoyBase	E_val: 3.00E-137	ISS

Expression Patterns of Glyma15g15620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g15620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g146000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g15620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g15620

Limit To All Plant Sequences

>Glyma15g15620.1   sequence type=CDS   gene model=Glyma15g15620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCATATCCACAGTCCACAAACTCACTCAATCAGAGCAAATTAAGCAATTTACAAACCCTAGTTCTCGTATATATTCTTCTTCTTTGCATCAATCCTTTGTCTCAAATTAAAATCATGGGAATTGTCACTACTGAATGCGAGCAAGTTTGTGCCGTGGCTCCTGCAAGGCTATACAAAGCCATGGCCTTCGATTTTAACAATGTTATGCCAAAAGCTATCCCAAATTTTGTTAAGAGTGCTGAAATCATTGGAGACGGAGGGCCGGGATCTATTAAGAAGCTCGTTCTTGTTAACGGATATGTGAATCAAAAGGTGGATGTGGTGGACGAAGAAAATTATGTGTACCACTACACGGTAGATGAAGGCAGTGTTTTATCAGATCTATTGGAGAAGGTGTGTTATGAGTATAAATTGGTGGCAAGTCTTGATGGAGGAGGATGCATCATCAAATCTACAGTCAAATATTACACCAAAGACGATACACAACTCTCAGAAGAGTTTTTGAAGGATAACAAGGAAAAATCTGCTGCGTTCACCAAGGCTGTTGTGGATTATCTTCTAGCTAATCCCAATTACAACTAA

Predicted protein sequences of Glyma15g15620

Limit To All Plant Sequences

>Glyma15g15620.1   sequence type=predicted peptide   gene model=Glyma15g15620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPYPQSTNSLNQSKLSNLQTLVLVYILLLCINPLSQIKIMGIVTTECEQVCAVAPARLYKAMAFDFNNVMPKAIPNFVKSAEIIGDGGPGSIKKLVLVNGYVNQKVDVVDEENYVYHYTVDEGSVLSDLLEKVCYEYKLVASLDGGGCIIKSTVKYYTKDDTQLSEEFLKDNKEKSAAFTKAVVDYLLANPNYN*

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