Glyma15g15610 - SoyBase

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Report for Sequence Feature Glyma15g15610

Feature Type:	gene_model
Chromosome:	Gm15
Start:	12000417
stop:	12002129
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g15610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF00407	PFAM	Pathogenesis-related protein Bet v I family	JGI		ISS
UniRef100_G7INB7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ABA-responsive protein ABR17 n=1 Tax=Medicago truncatula RepID=G7INB7_MEDTR	SoyBase	E_val: 6.00E-63	ISS
UniRef100_I1MGJ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGJ6_SOYBN	SoyBase	E_val: 3.00E-101	ISS

Expression Patterns of Glyma15g15610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g15610

Paralog	Evidence	Comments
Glyma09g04530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g15610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g145900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g15610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g15610

Limit To All Plant Sequences

>Glyma15g15610.1   sequence type=CDS   gene model=Glyma15g15610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTTTTTGCTTACGATGAAGAAAACTCCTCCACCGTGGCTCCGGTTACTCTCTACAAAGCTCTGACGAAAGATGCCGACACCATCATCCCAAAGATTATTGGTGCCATCCAAAGTATTGAAATTGTTGAAGGAAATGGAGGACCCGGAACCGTCAAGAAGATAACCGCTAATGAAGCAAGACGAGATGCAATCGACGAGGCTAACTTGGTATACGACTACAGCATAGTGGGAGGGACGGGGTTGCATGAAAGTTTGGAGAAAGTTACATTCCAGACAAAGGTGGCTCCTGGCCCTGATGGTAATGGCTCCATCGCCAAGGCCACTCTCACATTCCACACCAAAGGTGTTGCACCCCTCTCAGATGCAGTGCGTGATGAGACAAAGGCCAGGGGTGCTGGAATTTTCAAGGCCATTGAGGGCTACGTTTTGGCAAATCCTGCTTAA

Predicted protein sequences of Glyma15g15610

Limit To All Plant Sequences

>Glyma15g15610.1   sequence type=predicted peptide   gene model=Glyma15g15610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVFAYDEENSSTVAPVTLYKALTKDADTIIPKIIGAIQSIEIVEGNGGPGTVKKITANEARRDAIDEANLVYDYSIVGGTGLHESLEKVTFQTKVAPGPDGNGSIAKATLTFHTKGVAPLSDAVRDETKARGAGIFKAIEGYVLANPA*

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