Glyma15g15600 - SoyBase

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Report for Sequence Feature Glyma15g15600

Feature Type:	gene_model
Chromosome:	Gm15
Start:	11976474
stop:	11978111
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g15600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF00407	PFAM	Pathogenesis-related protein Bet v I family	JGI		ISS
UniRef100_G7IMZ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance response protein Pi49 n=1 Tax=Medicago truncatula RepID=G7IMZ2_MEDTR	SoyBase	E_val: 1.00E-82	ISS
UniRef100_I1MGJ5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGJ5_SOYBN	SoyBase	E_val: 8.00E-110	ISS

Expression Patterns of Glyma15g15600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g15600

Paralog	Evidence	Comments
Glyma09g04520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g15600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g145700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g15600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g15600

Limit To All Plant Sequences

>Glyma15g15600.1   sequence type=CDS   gene model=Glyma15g15600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTTGTTACTCAGATTTATGATACCCCTGCTGCTGTGCCTCCTACTAGGCTTTTCAAAGCCATGACGTTAGATTTCCATAACCTCTTCCCAAAGCTTGTGGATAGCATCCACAGCATTGTTTTCACACAAGGAAATGGTGGTCCGGGCACCATCAAGAAAATCAGCACCATTGAAGGTGGCAAAACCAAGTATGTGCTGCACAGAGTTGATGCAATTGATGAGGCTAACTTTGTATATAACTTCAGCATAATTGAGGGCACTGCCTTGGTTGACACGTTGGAGAAGGTCTCATTCGAGAGCCAATTGGTGGAAGGCCCAAATGGAGGATCCATTAGGAAGGTACGTGTTCAATTTTTCACCAAAGGGGATGCTACGCTTAGTGAGGAGGAGCTCAATGCCAACCAAGCCAAGATCCAAGGGCTTGTAAAACTTGTTGAAGGGTACCTTTTGGCAAATCCTGATTATTGA

Predicted protein sequences of Glyma15g15600

Limit To All Plant Sequences

>Glyma15g15600.1   sequence type=predicted peptide   gene model=Glyma15g15600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVVTQIYDTPAAVPPTRLFKAMTLDFHNLFPKLVDSIHSIVFTQGNGGPGTIKKISTIEGGKTKYVLHRVDAIDEANFVYNFSIIEGTALVDTLEKVSFESQLVEGPNGGSIRKVRVQFFTKGDATLSEEELNANQAKIQGLVKLVEGYLLANPDY*

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