Report for Sequence Feature Glyma15g15580
Feature Type: gene_model
Chromosome: Gm15
Start: 11963671
stop: 11965246
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g15580
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G49220 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF789) | chr5:19956627-19958453 FORWARD LENGTH=409
SoyBase E_val: 8.00E-48 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF05623 PFAM
Protein of unknown function (DUF789)
JGI ISS
UniRef100_I1MGJ3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGJ3_SOYBN
SoyBase E_val: 5.00E-137 ISS
UniRef100_Q9FJ18 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Gb|AAF31026.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FJ18_ARATH
SoyBase E_val: 2.00E-46 ISS
Expression Patterns of Glyma15g15580
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g15580
Paralog Evidence Comments
Glyma09g04500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g15580 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g145500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g15580
Coding sequences of Glyma15g15580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g15580.2 sequence type=CDS gene model=Glyma15g15580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCGATCTCCGGTGGTGCTGTCGTCGCCGGCGGGAACATGGGGAGGAGCCACCTGTACCTCGGCGAGAACCGTGTCTACTACCCGCCACCGTTGCGGAAATACAGAGAAGAACAGGAACATGAGGAGGAGCAGAGGTCAACGTTGTCAGAGAACAGACCCGGTTCATCTTCAGATTGCTCTGTTTCTTCGAGTGGAACAACGTGTGATGTCTCCAACTTGTGTCGGTTTTTGGAGCACACCACGCCACATGTTCCCGCCCAATATTGTCGGTCAAGAGAGTGTGACTCTGAATCATCTAGAGAGACAAGCAGGGATAGCAGCAATGGCTGTTCTGATGAAAAAAGGACAAAGAGTGTTCATGGCACTTGGAACCAACCTAACTCGTCGGATGCAAGCAATCACAGTTCAAAAAGAGTTTCACTAAGAAGTAAACCTTCAACAAGTGATGAGACCGAGAGCAGCAACCCACCCGGTCAGCTTATATTTGAATACTTCGAGCACGAAATACCTTATAATCGTGAGCCATTAGCAGATAAGATTGCTGACCTTGCATGTCAGTTTCCCGAGTTGAAGACATACCGAAGCTGTGATCTTTCCCCAGCAAATTGGGTTTCTTTGGCTTGGTATCCAATATACAGAATACCTACTGGTCCCACACTAGAGAGCATGAGTGCCTGCTTCCTGACTTTCCATTCCCTATCAACAGCTTTGCAAAATATCTATCATTACCAATCTTTTAAACTTGCCTTTCACAAGTTGAAAGCTTCTGTCTGGGATCTTGATGAGGTTTCTGAAGGTCAAAAAGCCGATTCTCTGTTGCGAGCCGCTGATAACTTTCAATTTGCTTCAAGCCTTTAA
Predicted protein sequences of Glyma15g15580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g15580.2 sequence type=predicted peptide gene model=Glyma15g15580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSISGGAVVAGGNMGRSHLYLGENRVYYPPPLRKYREEQEHEEEQRSTLSENRPGSSSDCSVSSSGTTCDVSNLCRFLEHTTPHVPAQYCRSRECDSESSRETSRDSSNGCSDEKRTKSVHGTWNQPNSSDASNHSSKRVSLRSKPSTSDETESSNPPGQLIFEYFEHEIPYNREPLADKIADLACQFPELKTYRSCDLSPANWVSLAWYPIYRIPTGPTLESMSACFLTFHSLSTALQNIYHYQSFKLAFHKLKASVWDLDEVSEGQKADSLLRAADNFQFASSL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
