Glyma15g15450 - SoyBase

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Report for Sequence Feature Glyma15g15450

Feature Type:	gene_model
Chromosome:	Gm15
Start:	11877221
stop:	11881227
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g15450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10240	AT	Annotation by Michelle Graham. TAIR10: FAR1-related sequence 11 \| chr1:3356835-3359271 REVERSE LENGTH=680	SoyBase	E_val: 0	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF03101	PFAM	FAR1 DNA-binding domain	JGI		ISS
PF04434	PFAM	SWIM zinc finger	JGI		ISS
PF10551	PFAM	MULE transposase domain	JGI		ISS
UniRef100_I1MGI3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MGI3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SY66	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein FAR1-RELATED SEQUENCE 11 n=1 Tax=Arabidopsis thaliana RepID=FRS11_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g15450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g15450

Paralog	Evidence	Comments
Glyma09g04394	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g15450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g144500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g15450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g15450

Limit To All Plant Sequences

>Glyma15g15450.2   sequence type=transcript   gene model=Glyma15g15450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCACTTCTATCTTCGTTTTTTTTTTCCTTTGATTATTTTTTCTTCTTCTCAAATTTTGTAGTTTGTTATTGACTGTTGAGCCCAACCTTTCTAATTGTGTCTGGAATGGCGTCGAGTTTGGCTGAGATTTTGGATCTGTGAGGGTTAAATGTGAGTTCATTATTGTGAGAATTGGGTGACCCACGTGAGAGAATCTTGGACATTGGAGAATAGTTCTGTTCTGGGAAGTGGAATTACGGTGAGAAACTTACTTTACTAAATAGGTGTTCATTACTCATGCTGAATTTGATCATTTTTAAGCTCTCCTAGCAGATAAGTTCAGTTTGTTGTTATGAGGCTTTGGCATTGAGATTAACACTCACTTTTAGTTTTACTGAATGGAACGTATCTGTATTCTGTAATTGGATTTTGGAGAAGCTGTGCTTAGTGCTTACTGTGTTGTTTAGAAGTTCTGTTACTTGCCAATTGCCATATATAGGATTCGCGTCCCCTCCGGTCCATTTTATTTATCCCTGTTCCGTGCCACAATTTTCCTTTAGTTTATCCTCTTTATCAATTGTTAGCCTCAGAGCTAACATGGATATAGGTAGCATTTAAGCTTACCTATATCATTGAGTATTTAAGTTTAAACATCTGCAAATGAATTAGGCTGTTATTACTGACAACAGAATGTCGGAAGGAACCAGTCTGGTGCTGGAATCATCTGAAAATGGCACAGATTTGTCTCAGGATGACATTGGCACCATTGAGGAAATAGCAGAGGAAACAATTTTGTCTAGACAAACTTCTGTCAACCTTGTTCCTTTTATTGGTCAAAGATTTGTCTCTCAAGAAGCAGCTTATGAATTTTATTGCAGTTTTGCTAAGCAATGTGGCTTTTCAATCAGACGACACCGGACTCGAGGGAAAGATGGGGTTGGCAGGGGAGTTACAAGGAGGGATTTTACTTGCCATTGTGGTGGATATCCCCAGATTAAACCTTCTGATGATGGGAAGGTGCAAAGGAACCGCAAATCATCTCGCTGTGGTTGCCAAGCATACATGCGTATTGTGAAAAGGTCAGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGGAACATTCATAATCACGAGTTGTTAAAATCCAATGAGGTGCGTCTTCTTCCAGCATATTGTCCCATATCTCCTGATGACAAGAGTCGTATATGCATGTTTGCTAAAGCTGGAATGTCAGTAAGGCAGATGCTAAGATTGATGGAGCTAGAGAAAGGCATCAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTAAGAAACCTGTTGCAGTCTTTCAGAAATGTGGATAGAGATAATGATGCCATTGATTTGATTGCTATGTGCAAGAGGTTAAAGGATGAAAACCACAACTTCAAGTATGAATTCAAGATAGATAGTAATAACAGGCTTGAACATATTGCATGGTCCTACAGTTCATCCATTCAATCATATGAGGCATTTGGTGATGCTGTGGTTTTTGATACAACCTATCGTGTAGAAGCTTATGACATGCTGTTGGGAATTTGGCTTGGTGTGGACAATAATGGAATGACTTGTTTCTTTAGTTGTGCACTTCTACGGGATGAAAACATTCAGTCTTTTTCGTGGGCTCTAAAGGCAAGAACCTTATGATATTGTAACTTGATAATCTTGTATTTGATTTCTCAATTGTCTGCTATCTAATGTAGGCTTTAATTACTATGCTGAACCTACTATTTGCTAGCTTTTGATAAAGTTTTGCAAAAATAAAATCTGATCTATTTT

Coding sequences of Glyma15g15450

Limit To All Plant Sequences

>Glyma15g15450.1   sequence type=CDS   gene model=Glyma15g15450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGAAGGAACCAGTCTGGTGCTGGAATCATCTGAAAATGGCACAGATTTGTCTCAGGATGACATTGGCACCATTGAGGAAATAGCAGAGGAAACAATTTTGTCTAGACAAACTTCTGTCAACCTTGTTCCTTTTATTGGTCAAAGATTTGTCTCTCAAGAAGCAGCTTATGAATTTTATTGCAGTTTTGCTAAGCAATGTGGCTTTTCAATCAGACGACACCGGACTCGAGGGAAAGATGGGGTTGGCAGGGGAGTTACAAGGAGGGATTTTACTTGCCATTGTGGTGGATATCCCCAGATTAAACCTTCTGATGATGGGAAGGTGCAAAGGAACCGCAAATCATCTCGCTGTGGTTGCCAAGCATACATGCGTATTGTGAAAAGGTCAGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGGAACATTCATAATCACGAGTTGTTAAAATCCAATGAGGTGCGTCTTCTTCCAGCATATTGTCCCATATCTCCTGATGACAAGAGTCGTATATGCATGTTTGCTAAAGCTGGAATGTCAGTAAGGCAGATGCTAAGATTGATGGAGCTAGAGAAAGGCATCAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTAAGAAACCTGTTGCAGTCTTTCAGAAATGTGGATAGAGATAATGATGCCATTGATTTGATTGCTATGTGCAAGAGGTTAAAGGATGAAAACCACAACTTCAAGTATGAATTCAAGATAGATAGTAATAACAGGCTTGAACATATTGCATGGTCCTACAGTTCATCCATTCAATCATATGAGGCATTTGGTGATGCTGTGGTTTTTGATACAACCTATCGTGTAGAAGCTTATGACATGCTGTTGGGAATTTGGCTTGGTGTGGACAATAATGGAATGACTTGTTTCTTTAGTTGTGCACTTCTACGGGATGAAAACATTCAGTCTTTTTCGTGGGCTCTAAAGGCTTTCTTGGGCTTCATGAAAGGAAAAGCTCCACAAACAATATTGACAGATCATAACATGTGGCTGAAAGAAGCTATTGCAGTTGAATTGCCTCAAACTAAACATGCCTTTTGTATATGGCATATTCTTTCTAAGTTCTCTGACTGGTTTTCTTTACTTCTTGGATCACAATATGATGAGTGGAAAGCTGAATTCCACCGGCTCTACAATTTGGAACAGGTGGAAGATTTTGAAGAGGGCTGGAGGCAAATGGTGGATCAATATGGACTCCACGCAAATAAACATATTATTAGCCTATATTCATTAAGGACATTTTGGGCACTACCATTCTTGAGGCATTACTTCTTTGCAGGATTGACCAGTACATGTCAGTCTGAATCCATTAATGCTTTCATCCAACGGTTCTTGAGTGTGCAGTCTCAATTAGATCGATTTGTGGAGCAAGTGGTTGAAATTGTTGATTTTAATGACCGAGCCGGAGCAACGCAAAAGATGCAAAGGAAACTGCAGAAAGTGTGCCTCAAAACAGGTTCACCTATTGAATCCCATGCTGCCACTGTCCTTACTCCTGATGCCTTAAGTAAACTCCAGGAAGAGCTAGTTTTGGCGCCACAATATGCATCCTTTCTGGTTGATGAAGGTCGTTTCCAGGTCAGACACCACTCTCAGTCAGATGGAGGATGCAAAGTATTTTGGGTTGCTTGTCAAGAGCACATCAGCTGCAGCTGCCATTTGTTTGAGTTTTCAGGCATCTTATGTAGACACGTGCTACGGGTCATGTCAACTAATAACTGTTTTCACATTCCTGATCAATATTTACCAGCCCGTTGGCGAGGCAATAATTCATCTTCTGTTAACCACTACCGTGGTACAACCAGTAGGGATCAGTCTGAAAGGATACAATTTTTGGAATCCATGGTTTCAACGTTTTTAGTGGAATCCATTGAAACAGAGGAACGCCTGGATGTTGCTTGCGAGCAAATTTCCATGGCGCTATCACGCATCAAAACCTTTCCTAGGTCCCCACACGGGGTGAATGACATTGCATATAGTTATCCATCAGATTCATTAATCCTGCCACAGGTAGAAGATACTGATGGAATGATTCACGGCTTTACAATCACAAATCCCCACGATTCTATCACTACTGGAAAGCTAAAGGAGAGAAGAGCAAGAGATGGAGTCGATCTCACTAGGAAGCGCAGGCAGTTCTCCTTGCCATCGTGTGCTCAATACGGACATGATGTGTCTGATTGCTCAATAATGGCGGGTGACAATATGAGTGGAGATGCATTAGGATACTTGTAG

>Glyma15g15450.2   sequence type=CDS   gene model=Glyma15g15450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGAAGGAACCAGTCTGGTGCTGGAATCATCTGAAAATGGCACAGATTTGTCTCAGGATGACATTGGCACCATTGAGGAAATAGCAGAGGAAACAATTTTGTCTAGACAAACTTCTGTCAACCTTGTTCCTTTTATTGGTCAAAGATTTGTCTCTCAAGAAGCAGCTTATGAATTTTATTGCAGTTTTGCTAAGCAATGTGGCTTTTCAATCAGACGACACCGGACTCGAGGGAAAGATGGGGTTGGCAGGGGAGTTACAAGGAGGGATTTTACTTGCCATTGTGGTGGATATCCCCAGATTAAACCTTCTGATGATGGGAAGGTGCAAAGGAACCGCAAATCATCTCGCTGTGGTTGCCAAGCATACATGCGTATTGTGAAAAGGTCAGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGGAACATTCATAATCACGAGTTGTTAAAATCCAATGAGGTGCGTCTTCTTCCAGCATATTGTCCCATATCTCCTGATGACAAGAGTCGTATATGCATGTTTGCTAAAGCTGGAATGTCAGTAAGGCAGATGCTAAGATTGATGGAGCTAGAGAAAGGCATCAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTAAGAAACCTGTTGCAGTCTTTCAGAAATGTGGATAGAGATAATGATGCCATTGATTTGATTGCTATGTGCAAGAGGTTAAAGGATGAAAACCACAACTTCAAGTATGAATTCAAGATAGATAGTAATAACAGGCTTGAACATATTGCATGGTCCTACAGTTCATCCATTCAATCATATGAGGCATTTGGTGATGCTGTGGTTTTTGATACAACCTATCGTGTAGAAGCTTATGACATGCTGTTGGGAATTTGGCTTGGTGTGGACAATAATGGAATGACTTGTTTCTTTAGTTGTGCACTTCTACGGGATGAAAACATTCAGTCTTTTTCGTGGGCTCTAAAGGCAAGAACCTTATGA

Predicted protein sequences of Glyma15g15450

Limit To All Plant Sequences

>Glyma15g15450.1   sequence type=predicted peptide   gene model=Glyma15g15450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEGTSLVLESSENGTDLSQDDIGTIEEIAEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHCGGYPQIKPSDDGKVQRNRKSSRCGCQAYMRIVKRSDFDVPEWRVTGFRNIHNHELLKSNEVRLLPAYCPISPDDKSRICMFAKAGMSVRQMLRLMELEKGIKLGCLPFTEIDVRNLLQSFRNVDRDNDAIDLIAMCKRLKDENHNFKYEFKIDSNNRLEHIAWSYSSSIQSYEAFGDAVVFDTTYRVEAYDMLLGIWLGVDNNGMTCFFSCALLRDENIQSFSWALKAFLGFMKGKAPQTILTDHNMWLKEAIAVELPQTKHAFCIWHILSKFSDWFSLLLGSQYDEWKAEFHRLYNLEQVEDFEEGWRQMVDQYGLHANKHIISLYSLRTFWALPFLRHYFFAGLTSTCQSESINAFIQRFLSVQSQLDRFVEQVVEIVDFNDRAGATQKMQRKLQKVCLKTGSPIESHAATVLTPDALSKLQEELVLAPQYASFLVDEGRFQVRHHSQSDGGCKVFWVACQEHISCSCHLFEFSGILCRHVLRVMSTNNCFHIPDQYLPARWRGNNSSSVNHYRGTTSRDQSERIQFLESMVSTFLVESIETEERLDVACEQISMALSRIKTFPRSPHGVNDIAYSYPSDSLILPQVEDTDGMIHGFTITNPHDSITTGKLKERRARDGVDLTRKRRQFSLPSCAQYGHDVSDCSIMAGDNMSGDALGYL*

>Glyma15g15450.2   sequence type=predicted peptide   gene model=Glyma15g15450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEGTSLVLESSENGTDLSQDDIGTIEEIAEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHCGGYPQIKPSDDGKVQRNRKSSRCGCQAYMRIVKRSDFDVPEWRVTGFRNIHNHELLKSNEVRLLPAYCPISPDDKSRICMFAKAGMSVRQMLRLMELEKGIKLGCLPFTEIDVRNLLQSFRNVDRDNDAIDLIAMCKRLKDENHNFKYEFKIDSNNRLEHIAWSYSSSIQSYEAFGDAVVFDTTYRVEAYDMLLGIWLGVDNNGMTCFFSCALLRDENIQSFSWALKARTL*

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