Glyma15g15380 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g15380

Feature Type:	gene_model
Chromosome:	Gm15
Start:	11803631
stop:	11806902
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g15380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G16146	AT	Annotation by Michelle Graham. TAIR10: cAMP-regulated phosphoprotein 19-related protein \| chr4:9142663-9144356 REVERSE LENGTH=102	SoyBase	E_val: 6.00E-32	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04667	PFAM	cAMP-regulated phosphoprotein/endosulfine conserved region	JGI		ISS
UniRef100_B6T0Q4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Negatively light-regulated protein n=1 Tax=Zea mays RepID=B6T0Q4_MAIZE	SoyBase	E_val: 3.00E-22	ISS
UniRef100_C6T3A4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T3A4_SOYBN	SoyBase	E_val: 3.00E-60	ISS

Expression Patterns of Glyma15g15380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g15380

Paralog	Evidence	Comments
Glyma09g04352	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g15380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g143800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g15380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g15380

Limit To All Plant Sequences

>Glyma15g15380.2   sequence type=transcript   gene model=Glyma15g15380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCTTATTTCTTAGCCTCTCTTCATAAATGTAATCTCTTGGTATGCGTAGTGGATGCATATTCTTATCTAACGTTCTCACTCAAACCTCTTCTATCTCATTGTCTCCACTTTCTTCTCTTTTTTCCCCTTTTAACACTTTCTCTTCCTTGCATCTCTACGTTCCTCTTACCACAAGGTAAACAAAGATGGCAGGGTGCGATAAGGAAGACTATTTCTCTGCCCCGAATGCTGAGGATAATGAAAGAGCATTCTTTGATTCGGCAGACTGGGCATTATGCAAGCAAGGTGCTGGAGTGAATCAACAATCTACAGCAACAGTGGAGACACTGCGACCAAAACTACAGAGAACTCCACATCAGCAGCTTCCTCCAAGACGACCTGCATGCACATCTGGTTGAGATAATTTCGTGAATTACTATAATGTGGAGAGTAGACTTAATAAACGGAACAAGGATTTGCTCAGCCAAATTTACTATTACAAAACTCATGATGTTCCTGATCTGATGTATATTACAATTTACTTCATGCTTTGTGTTATTAGCAGTTCAATAAAAATTCCATTTCAATTCCCTTTTGTTTCTTCTATTCTATCTGTTGGACGGGCCTAACAAGTAACAACAATGGGAGATGGGACGTGAGGATCAAATTAATCTCAAAGCATAGCACTTTTGAGATTTTTTCAATGGGACATAATACTTTTTTTTTTAAGGTTTACAACAATCTCCCTTGTAGGATACATGATATAATGTTTTTCAAATAATAAAAGAAAGTTAGTATAAAAATAAAAAAGAAGAAGG

Coding sequences of Glyma15g15380

Limit To All Plant Sequences

>Glyma15g15380.1   sequence type=CDS   gene model=Glyma15g15380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGGTGCGATAAGGAAGACTATTTCTCTGCCCCGAATGCTGAGACAACATCCGAGGGAAAGTACGGTAGGCTTGCCCCAAAGAAGAAGCCTTTGATATCGAAAGATAATGAAAGAGCATTCTTTGATTCGGCAGACTGGGCATTATGCAAGCAAGGTGCTGGAGTGAATCAACAATCTACAGCAACAGTGGAGACACTGCGACCAAAACTACAGAGAACTCCACATCAGCAGCTTCCTCCAAGACGACCTGCATGCACATCTGGTTGA

>Glyma15g15380.2   sequence type=CDS   gene model=Glyma15g15380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGGTGCGATAAGGAAGACTATTTCTCTGCCCCGAATGCTGAGGATAATGAAAGAGCATTCTTTGATTCGGCAGACTGGGCATTATGCAAGCAAGGTGCTGGAGTGAATCAACAATCTACAGCAACAGTGGAGACACTGCGACCAAAACTACAGAGAACTCCACATCAGCAGCTTCCTCCAAGACGACCTGCATGCACATCTGGTTGA

Predicted protein sequences of Glyma15g15380

Limit To All Plant Sequences

>Glyma15g15380.1   sequence type=predicted peptide   gene model=Glyma15g15380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGCDKEDYFSAPNAETTSEGKYGRLAPKKKPLISKDNERAFFDSADWALCKQGAGVNQQSTATVETLRPKLQRTPHQQLPPRRPACTSG*

>Glyma15g15380.2   sequence type=predicted peptide   gene model=Glyma15g15380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGCDKEDYFSAPNAEDNERAFFDSADWALCKQGAGVNQQSTATVETLRPKLQRTPHQQLPPRRPACTSG*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain