Glyma15g15370 - SoyBase

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Report for Sequence Feature Glyma15g15370

Feature Type:	gene_model
Chromosome:	Gm15
Start:	11792572
stop:	11799367
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g15370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49360	AT	Annotation by Michelle Graham. TAIR10: beta-xylosidase 1 \| chr5:20012179-20016659 REVERSE LENGTH=774	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0010214	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed coat development	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0046556	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alpha-N-arabinofuranosidase activity	SoyBase	N/A	ISS
PF00933	PFAM	Glycosyl hydrolase family 3 N terminal domain	JGI		ISS
PF01915	PFAM	Glycosyl hydrolase family 3 C terminal domain	JGI		ISS
UniRef100_G7IMV1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta xylosidase n=1 Tax=Medicago truncatula RepID=G7IMV1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MGH2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGH2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g15370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g15370

Paralog	Evidence	Comments
Glyma09g04337	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g15370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g143700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g15370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g15370

Limit To All Plant Sequences

>Glyma15g15370.2   sequence type=transcript   gene model=Glyma15g15370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCACACTTCACTCATTCCAAACCCACATTTTCAAAATGGCTTGTGAAAATGACAACAACAACAAAGGCCTATTACTTGCCCTAGGGCTAGTACTTTGTGTCACCCTGTCCTTCTTCCCAAGGGTCACAGAAGGGAGGGTGCCCTTTGCATGCGACCCTAGGAACGGTCTCACGAGGGGTTTCAAGTTTTGCAACACGCACGTGCCAATCCACGTGAGGGTGCAGGACCTCATTGCGAGGCTCACATTGCCGGAGAAGATCAGGCTCGTGGTCAACAATGCCATCGCCGTGCCCAGGCTCGGCATCCAAGGCTACGAGTGGTGGTCCGAGGCTCTCCACGGCGTCTCCAATGTGGGCCCCGGCACCAAGTTCGGCGGAGCCTTCCCCGGCGCCACCATGTTCCCTCAGGTCATCTCGACCGCTGCTTCGTTCAATCAGTCGCTGTGGCAGGAAATTGGACGGGTGGTGTCTGATGAAGCAAGAGCAATGTACAACGGTGGACAGGCTGGTTTGACGTATTGGAGTCCTAATGTGAACATTTTCCGTGACCCACGGTGGGGCCGTGGCCAAGAGACTCCCGGCGAGGACCCAACACTGGCCGCGAAATACGCCGCCAGCTATGTCAAAGGACTTCAAGGCGACAGTGCCGGAAACCACCTCAAGGTTGCTGCTTGTTGTAAACACTACACTGCCTATGATCTTGATAACTGGAATGGTGTGGACAGGTTTCATTTCAACGCCAAGGTGAGTAAACAGGATTTGGAGGATACTTATGATGTACCATTTAAAGCGTGCGTGTTGGAAGGGCAAGTGGCGAGTGTGATGTGCTCCTACAATCAGGTGAATGGCAAGCCCACGTGTGCTGACCCAGATCTCCTTCGCAACACTATTCGTGGCCAATGGCGCCTCAATGGGTATATTGTCTCAGACTGTGATTCAGTTGGAGTTTTCTTTGACAACCAACACTACACAAAAACACCTGAAGAGGCAGCTGCTGAGGCCATTAAAGCGGGTCTAGACTTGGATTGTGGCCCATTTTTGGCTATCCACACTGATTCTGCCATTAGGAAAGGGCTTATTTCCGAAAATGATCTTAACCTTGCCTTGGCCAACCTTATTTCGGTCCAAATGAGATTGGGTATGTTCGACGGCGAACCGTCAACCCAACCATACGGAAACCTAGGCCCAAGAGATGTGTGCACCTCGGCCCATCAACAATTGGCCCTTGAAGCAGCTAGAGAGAGTATAGTCTTACTACAAAACAAAGGAAACTCCCTACCATTATCCCCTTCAAGACTTCGTACTATAGGTGTCGTTGGACCCAATGCTGATGCTACCGTTACAATGATTGGGAACTATGCTGGTGTGGCATGTGGTTATACCACTCCTTTGCAAGGAATTGCGAGGTATGTGAAGACGGCTCATCAAGTGGGGTGTAGGGGTGTGGCTTGTAGGGGAAATGAACTATTTGGGGCTGCAGAGACCATAGCTAGGCAAGCTGATGCGATTGTTTTGGTAATGGGCCTTGACCAGACTGTAGAAGCGGAAACAAGAGATAGAGTTGGGCTTCTCTTACCGGGCCTTCAACAAGAACTTGTGACAAGGGTGGCTAGGGCCGCTAAGGGCCCAGTTATCTTGCTCATCATGTCTGGTGGCCCAGTTGATATCTCGTTTGCCAAAAATGACCCCAAGATTAGTGCCATTTTGTGGGTTGGTTATCCCGGGCAAGCTGGGGGAACTGCCATTGCTGATGTAATCTTTGGTACAACTAACCCAGGTAAATTATTCCCACACCATTATCTTGAATTTATTTCATATACAATATAAAATGTTTCACAAATACTAAATAAGAATGTGTAAATAGTATATGCATAATTAGTGTAAAATATTTTTACACTATCTCAATCATAAACTATTAGTATGAAATTTTACACAAACAGTATATAGAAATTAAATTCTAAAGTTTTATCTTATATCAACATGTCATG

Coding sequences of Glyma15g15370

Limit To All Plant Sequences

>Glyma15g15370.1   sequence type=CDS   gene model=Glyma15g15370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTGTGAAAATGACAACAACAACAAAGGCCTATTACTTGCCCTAGGGCTAGTACTTTGTGTCACCCTGTCCTTCTTCCCAAGGGTCACAGAAGGGAGGGTGCCCTTTGCATGCGACCCTAGGAACGGTCTCACGAGGGGTTTCAAGTTTTGCAACACGCACGTGCCAATCCACGTGAGGGTGCAGGACCTCATTGCGAGGCTCACATTGCCGGAGAAGATCAGGCTCGTGGTCAACAATGCCATCGCCGTGCCCAGGCTCGGCATCCAAGGCTACGAGTGGTGGTCCGAGGCTCTCCACGGCGTCTCCAATGTGGGCCCCGGCACCAAGTTCGGCGGAGCCTTCCCCGGCGCCACCATGTTCCCTCAGGTCATCTCGACCGCTGCTTCGTTCAATCAGTCGCTGTGGCAGGAAATTGGACGGGTGGTGTCTGATGAAGCAAGAGCAATGTACAACGGTGGACAGGCTGGTTTGACGTATTGGAGTCCTAATGTGAACATTTTCCGTGACCCACGGTGGGGCCGTGGCCAAGAGACTCCCGGCGAGGACCCAACACTGGCCGCGAAATACGCCGCCAGCTATGTCAAAGGACTTCAAGGCGACAGTGCCGGAAACCACCTCAAGGTTGCTGCTTGTTGTAAACACTACACTGCCTATGATCTTGATAACTGGAATGGTGTGGACAGGTTTCATTTCAACGCCAAGGTGAGTAAACAGGATTTGGAGGATACTTATGATGTACCATTTAAAGCGTGCGTGTTGGAAGGGCAAGTGGCGAGTGTGATGTGCTCCTACAATCAGGTGAATGGCAAGCCCACGTGTGCTGACCCAGATCTCCTTCGCAACACTATTCGTGGCCAATGGCGCCTCAATGGGTATATTGTCTCAGACTGTGATTCAGTTGGAGTTTTCTTTGACAACCAACACTACACAAAAACACCTGAAGAGGCAGCTGCTGAGGCCATTAAAGCGGGTCTAGACTTGGATTGTGGCCCATTTTTGGCTATCCACACTGATTCTGCCATTAGGAAAGGGCTTATTTCCGAAAATGATCTTAACCTTGCCTTGGCCAACCTTATTTCGGTCCAAATGAGATTGGGTATGTTCGACGGCGAACCGTCAACCCAACCATACGGAAACCTAGGCCCAAGAGATGTGTGCACCTCGGCCCATCAACAATTGGCCCTTGAAGCAGCTAGAGAGAGTATAGTCTTACTACAAAACAAAGGAAACTCCCTACCATTATCCCCTTCAAGACTTCGTACTATAGGTGTCGTTGGACCCAATGCTGATGCTACCGTTACAATGATTGGGAACTATGCTGGTGTGGCATGTGGTTATACCACTCCTTTGCAAGGAATTGCGAGGTATGTGAAGACGGCTCATCAAGTGGGGTGTAGGGGTGTGGCTTGTAGGGGAAATGAACTATTTGGGGCTGCAGAGACCATAGCTAGGCAAGCTGATGCGATTGTTTTGGTAATGGGCCTTGACCAGACTGTAGAAGCGGAAACAAGAGATAGAGTTGGGCTTCTCTTACCGGGCCTTCAACAAGAACTTGTGACAAGGGTGGCTAGGGCCGCTAAGGGCCCAGTTATCTTGCTCATCATGTCTGGTGGCCCAGTTGATATCTCGTTTGCCAAAAATGACCCCAAGATTAGTGCCATTTTGTGGGTTGGTTATCCCGGGCAAGCTGGGGGAACTGCCATTGCTGATGTAATCTTTGGTACAACTAACCCAGGAGGAAGGTTACCCATGACATGGTACCCACAAGGTTACTTGGCCAAAGTGCCCATGACAAACATGGACATGCGTCCAAACCCAACAACAGGGTACCCAGGAAGAACCTATAGATTCTACAAAGGTCCTGTAGTGTTCCCATTCGGACATGGCCTAAGTTACTCAAGATTCAGCCACAGCTTAGCACTTGCCCCCAAACAGGTCTCAGTGCCCATAATGAGCCTCCAAGCCTTGACAAACTCAACCCTCTCAAGCAAAGCAGTTAAGGTGAGCCATGCCAATTGTGATGACTCATTGGAGATGGAATTCCACGTTGATGTGAAAAACGAAGGCTCAATGGATGGGACCCACACCCTTCTCATATTCTCACAACCACCCCATGGAAAATGGTCGCAAATTAAACAATTGGTGGGCTTCCACAAGACCCATGTTCTTGCTGGCTCAAAGCAACGAGTCAAGGTTGGTGTTCATGTGTGCAAACACTTATCCGTTGTGGACCAGTTCGGGGTTCGAAGAATCCCAACCGGTGAACATGAACTCCACATTGGTGATGTCAAACATTCAATTTCTGTTCAAACTACGCATTAA

>Glyma15g15370.2   sequence type=CDS   gene model=Glyma15g15370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTGTGAAAATGACAACAACAACAAAGGCCTATTACTTGCCCTAGGGCTAGTACTTTGTGTCACCCTGTCCTTCTTCCCAAGGGTCACAGAAGGGAGGGTGCCCTTTGCATGCGACCCTAGGAACGGTCTCACGAGGGGTTTCAAGTTTTGCAACACGCACGTGCCAATCCACGTGAGGGTGCAGGACCTCATTGCGAGGCTCACATTGCCGGAGAAGATCAGGCTCGTGGTCAACAATGCCATCGCCGTGCCCAGGCTCGGCATCCAAGGCTACGAGTGGTGGTCCGAGGCTCTCCACGGCGTCTCCAATGTGGGCCCCGGCACCAAGTTCGGCGGAGCCTTCCCCGGCGCCACCATGTTCCCTCAGGTCATCTCGACCGCTGCTTCGTTCAATCAGTCGCTGTGGCAGGAAATTGGACGGGTGGTGTCTGATGAAGCAAGAGCAATGTACAACGGTGGACAGGCTGGTTTGACGTATTGGAGTCCTAATGTGAACATTTTCCGTGACCCACGGTGGGGCCGTGGCCAAGAGACTCCCGGCGAGGACCCAACACTGGCCGCGAAATACGCCGCCAGCTATGTCAAAGGACTTCAAGGCGACAGTGCCGGAAACCACCTCAAGGTTGCTGCTTGTTGTAAACACTACACTGCCTATGATCTTGATAACTGGAATGGTGTGGACAGGTTTCATTTCAACGCCAAGGTGAGTAAACAGGATTTGGAGGATACTTATGATGTACCATTTAAAGCGTGCGTGTTGGAAGGGCAAGTGGCGAGTGTGATGTGCTCCTACAATCAGGTGAATGGCAAGCCCACGTGTGCTGACCCAGATCTCCTTCGCAACACTATTCGTGGCCAATGGCGCCTCAATGGGTATATTGTCTCAGACTGTGATTCAGTTGGAGTTTTCTTTGACAACCAACACTACACAAAAACACCTGAAGAGGCAGCTGCTGAGGCCATTAAAGCGGGTCTAGACTTGGATTGTGGCCCATTTTTGGCTATCCACACTGATTCTGCCATTAGGAAAGGGCTTATTTCCGAAAATGATCTTAACCTTGCCTTGGCCAACCTTATTTCGGTCCAAATGAGATTGGGTATGTTCGACGGCGAACCGTCAACCCAACCATACGGAAACCTAGGCCCAAGAGATGTGTGCACCTCGGCCCATCAACAATTGGCCCTTGAAGCAGCTAGAGAGAGTATAGTCTTACTACAAAACAAAGGAAACTCCCTACCATTATCCCCTTCAAGACTTCGTACTATAGGTGTCGTTGGACCCAATGCTGATGCTACCGTTACAATGATTGGGAACTATGCTGGTGTGGCATGTGGTTATACCACTCCTTTGCAAGGAATTGCGAGGTATGTGAAGACGGCTCATCAAGTGGGGTGTAGGGGTGTGGCTTGTAGGGGAAATGAACTATTTGGGGCTGCAGAGACCATAGCTAGGCAAGCTGATGCGATTGTTTTGGTAATGGGCCTTGACCAGACTGTAGAAGCGGAAACAAGAGATAGAGTTGGGCTTCTCTTACCGGGCCTTCAACAAGAACTTGTGACAAGGGTGGCTAGGGCCGCTAAGGGCCCAGTTATCTTGCTCATCATGTCTGGTGGCCCAGTTGATATCTCGTTTGCCAAAAATGACCCCAAGATTAGTGCCATTTTGTGGGTTGGTTATCCCGGGCAAGCTGGGGGAACTGCCATTGCTGATGTAATCTTTGGTACAACTAACCCAGGTAAATTATTCCCACACCATTATCTTGAATTTATTTCATATACAATATAA

Predicted protein sequences of Glyma15g15370

Limit To All Plant Sequences

>Glyma15g15370.1   sequence type=predicted peptide   gene model=Glyma15g15370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACENDNNNKGLLLALGLVLCVTLSFFPRVTEGRVPFACDPRNGLTRGFKFCNTHVPIHVRVQDLIARLTLPEKIRLVVNNAIAVPRLGIQGYEWWSEALHGVSNVGPGTKFGGAFPGATMFPQVISTAASFNQSLWQEIGRVVSDEARAMYNGGQAGLTYWSPNVNIFRDPRWGRGQETPGEDPTLAAKYAASYVKGLQGDSAGNHLKVAACCKHYTAYDLDNWNGVDRFHFNAKVSKQDLEDTYDVPFKACVLEGQVASVMCSYNQVNGKPTCADPDLLRNTIRGQWRLNGYIVSDCDSVGVFFDNQHYTKTPEEAAAEAIKAGLDLDCGPFLAIHTDSAIRKGLISENDLNLALANLISVQMRLGMFDGEPSTQPYGNLGPRDVCTSAHQQLALEAARESIVLLQNKGNSLPLSPSRLRTIGVVGPNADATVTMIGNYAGVACGYTTPLQGIARYVKTAHQVGCRGVACRGNELFGAAETIARQADAIVLVMGLDQTVEAETRDRVGLLLPGLQQELVTRVARAAKGPVILLIMSGGPVDISFAKNDPKISAILWVGYPGQAGGTAIADVIFGTTNPGGRLPMTWYPQGYLAKVPMTNMDMRPNPTTGYPGRTYRFYKGPVVFPFGHGLSYSRFSHSLALAPKQVSVPIMSLQALTNSTLSSKAVKVSHANCDDSLEMEFHVDVKNEGSMDGTHTLLIFSQPPHGKWSQIKQLVGFHKTHVLAGSKQRVKVGVHVCKHLSVVDQFGVRRIPTGEHELHIGDVKHSISVQTTH*

>Glyma15g15370.2   sequence type=predicted peptide   gene model=Glyma15g15370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACENDNNNKGLLLALGLVLCVTLSFFPRVTEGRVPFACDPRNGLTRGFKFCNTHVPIHVRVQDLIARLTLPEKIRLVVNNAIAVPRLGIQGYEWWSEALHGVSNVGPGTKFGGAFPGATMFPQVISTAASFNQSLWQEIGRVVSDEARAMYNGGQAGLTYWSPNVNIFRDPRWGRGQETPGEDPTLAAKYAASYVKGLQGDSAGNHLKVAACCKHYTAYDLDNWNGVDRFHFNAKVSKQDLEDTYDVPFKACVLEGQVASVMCSYNQVNGKPTCADPDLLRNTIRGQWRLNGYIVSDCDSVGVFFDNQHYTKTPEEAAAEAIKAGLDLDCGPFLAIHTDSAIRKGLISENDLNLALANLISVQMRLGMFDGEPSTQPYGNLGPRDVCTSAHQQLALEAARESIVLLQNKGNSLPLSPSRLRTIGVVGPNADATVTMIGNYAGVACGYTTPLQGIARYVKTAHQVGCRGVACRGNELFGAAETIARQADAIVLVMGLDQTVEAETRDRVGLLLPGLQQELVTRVARAAKGPVILLIMSGGPVDISFAKNDPKISAILWVGYPGQAGGTAIADVIFGTTNPGKLFPHHYLEFISYTI*

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