SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G16160 | AT | Annotation by Michelle Graham. TAIR10: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr4:9157545-9158738 FORWARD LENGTH=178 | SoyBase | E_val: 2.00E-77 | ISS |
| GO:0015031 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein transport | SoyBase | N/A | ISS |
| GO:0005744 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane presequence translocase complex | SoyBase | N/A | ISS |
| GO:0009527 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid outer membrane | SoyBase | N/A | ISS |
| GO:0031359 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to chloroplast outer membrane | SoyBase | N/A | ISS |
| GO:0015171 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0015450 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | SoyBase | N/A | ISS |
| PF02466 | PFAM | Tim17/Tim22/Tim23 family | JGI | ISS | |
| UniRef100_C6SWV4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWV4_SOYBN | SoyBase | E_val: 4.00E-127 | ISS |
| UniRef100_G9JKP3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Plastid OEP16.2 n=1 Tax=Pisum sativum RepID=G9JKP3_PEA | SoyBase | E_val: 1.00E-102 | ISS |
|
Glyma15g15260 not represented in the dataset |
Glyma15g15260 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g04250 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g142900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g15260.2 sequence type=transcript gene model=Glyma15g15260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTCTCTCCCTTTGTTGCTATTATTACCAACACTTTGCTTCCTTTTTCTTCTCTTACCAAGTGAATCTCAGAGAGATCTTGAATCAGTAGTTTATATTAGTTAAGATGAACCTGAACACGAGCAGTGACTTGGAGACTCGGTCTCTGCTTGATGAGCTTTGTAACTTTAATAAGAAGGGACTCTTAGACCTTGGACACCCTCTTCTCAATCGAATCTTTGAGAGCTTCGTCAAAGCTGCTGGAATAGGAGCGGTTCAAGCTGTGTCCCGTGAGGCTTATTTCACAGCCATTGACGGTACCGGGGCTGATAATAGTGGAGGTTTGCCACCAGAAATTTCAAGCGCCAAGAAAAATCGTTTGCCAGGTCTTAAAGGAGAGACCAGTAACAAATCTCTTGAGGCCATGGTGAAGAGCACGGGCAAAGAGTCCTTACAGTGGGGTAATGAAACATTACCACTTGCTTATGTTATATTAAAATTTGAATTTGCTAAAAGGAATAGTGATTGTTTTTAGCTCTGTAATAACTTAAATTTGCCAAAGTTGCAAGGCTTAATTGAGTCTCAACATTTTCTGCTTTCCTCTTGTTTATGTTCTGTGTTTATTCTAAATGGTTATTTTCCTGTATTGCACAATTTTAAACGCAAATTTCCCTATTTATAGGACATATGAACCTTAAAGATTCTGTTGAATGCAGGAGTGGCTGCAGGATTGTATTCAGGTCTCACATATGGGCTAAAGGAAGCTCGTGGAGCTCATGACTGGAAAAACAGTGCAGTTGCTGGAGCAATCACTGGGGCGACCCTTGCACTTACATTGGAAGACTCCACTCATGAGCAGATTGTGCAATGTGCCATCACTGGAGCAGCTATCTCCACTGCTGCAAATCTTCTCACTGGAATTTTCTAAATGGATGCCCTGTTCTTATTGGCTTTTAGTGACCTTTTTCTCTTCTGAACTGTGACAGTTATTTATAGATATTTAAGATGGACTTGCAAGCATTTCCTTTTGGATTTTTAGTCATCAGTGATGAGTTTCTTGTCAAAGGATTTTGAGTTCTTTTTTTTTTTCCTTTTGCTCACGCATACCTCTTTTTCTCCTTAATAACCGTTCATCTACTAGAATAATAATCTACACTTGACAAATT
>Glyma15g15260.1 sequence type=CDS gene model=Glyma15g15260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACCTGAACACGAGCAGTGACTTGGAGACTCGGTCTCTGCTTGATGAGCTTTGTAACTTTAATAAGAAGGGACTCTTAGACCTTGGACACCCTCTTCTCAATCGAATCTTTGAGAGCTTCGTCAAAGCTGCTGGAATAGGAGCGGTTCAAGCTGTGTCCCGTGAGGCTTATTTCACAGCCATTGACGGTACCGGGGCTGATAATAGTGGAGGTTTGCCACCAGAAATTTCAAGCGCCAAGAAAAATCGTTTGCCAGGTCTTAAAGGAGAGACCAGTAACAAATCTCTTGAGGCCATGGTGAAGAGCACGGGCAAAGAGTCCTTACAGTGGGGAGTGGCTGCAGGATTGTATTCAGGTCTCACATATGGGCTAAAGGAAGCTCGTGGAGCTCATGACTGGAAAAACAGTGCAGTTGCTGGAGCAATCACTGGGGCGACCCTTGCACTTACATTGGAAGACTCCACTCATGAGCAGATTGTGCAATGTGCCATCACTGGAGCAGCTATCTCCACTGCTGCAAATCTTCTCACTGGAATTTTCTAA >Glyma15g15260.2 sequence type=CDS gene model=Glyma15g15260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACCTGAACACGAGCAGTGACTTGGAGACTCGGTCTCTGCTTGATGAGCTTTGTAACTTTAATAAGAAGGGACTCTTAGACCTTGGACACCCTCTTCTCAATCGAATCTTTGAGAGCTTCGTCAAAGCTGCTGGAATAGGAGCGGTTCAAGCTGTGTCCCGTGAGGCTTATTTCACAGCCATTGACGGTACCGGGGCTGATAATAGTGGAGGTTTGCCACCAGAAATTTCAAGCGCCAAGAAAAATCGTTTGCCAGGTCTTAAAGGAGAGACCAGTAACAAATCTCTTGAGGCCATGGTGAAGAGCACGGGCAAAGAGTCCTTACAGTGGGGTAATGAAACATTACCACTTGCTTATGTTATATTAAAATTTGAATTTGCTAAAAGGAATAGTGATTGTTTTTAG
>Glyma15g15260.1 sequence type=predicted peptide gene model=Glyma15g15260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNLNTSSDLETRSLLDELCNFNKKGLLDLGHPLLNRIFESFVKAAGIGAVQAVSREAYFTAIDGTGADNSGGLPPEISSAKKNRLPGLKGETSNKSLEAMVKSTGKESLQWGVAAGLYSGLTYGLKEARGAHDWKNSAVAGAITGATLALTLEDSTHEQIVQCAITGAAISTAANLLTGIF* >Glyma15g15260.2 sequence type=predicted peptide gene model=Glyma15g15260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNLNTSSDLETRSLLDELCNFNKKGLLDLGHPLLNRIFESFVKAAGIGAVQAVSREAYFTAIDGTGADNSGGLPPEISSAKKNRLPGLKGETSNKSLEAMVKSTGKESLQWGNETLPLAYVILKFEFAKRNSDCF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
