Glyma15g15200 - SoyBase

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Report for Sequence Feature Glyma15g15200

Feature Type:	gene_model
Chromosome:	Gm15
Start:	11629088
stop:	11631259
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g15200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G16260	AT	Annotation by Michelle Graham. TAIR10: Glycosyl hydrolase superfamily protein \| chr4:9200180-9201441 REVERSE LENGTH=344	SoyBase	E_val: 3.00E-155	ISS
GO:0002215	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to nematode	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009817	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
PTHR16631	Panther	GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED	JGI		ISS
PF00332	PFAM	Glycosyl hydrolases family 17	JGI		ISS
UniRef100_F8SMB8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acidic glucanase n=1 Tax=Glycine max RepID=F8SMB8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1MGG0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MGG0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g15200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g15200

Paralog	Evidence	Comments
Glyma09g04191	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g15200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g142400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g15200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g15200

Limit To All Plant Sequences

>Glyma15g15200.1   sequence type=CDS   gene model=Glyma15g15200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTCTCTCTTCGCTAGAAACCAGAGGTTCTCATTGGCTACTCTCCTGCTTCTTCTGGAACTATTGACAGGAAACCTTCGCATGGCAGATGCTCAAATTGGTGTGTGTTATGGCATGCTGGGCAACAATCTACCGTCAGCAAACGATGTTATAGGTCTTTATAGATCAAATAACATAAAGAGAATGAGACTCTATGATCCTAATCAAGCTGCTCTAGAAGCACTTAGAAATTCTGGCATTGAACTCATTCTTGGGGTGCCAAACTCTGACCTTCAAGGCCTTGCCACCAATCCTGACACTTCTCGTCAATGGGTGCAAAAAAACGTGTTGAACTTTTGGCCTAGTGTCAAAATCAAGTACGTGGCAGTTGGAAATGAAGTGAGTCCCGTTGGAGGCTCTTCTTCGGTAGCCCAATATGTTCTACCTGCCATCCAAAATGTATACCAAGCAATAAGAGCTCAAGGCCTTCATGATCAAATCAAGGTTTCAACATCTATTGACATGACCCTAATAGGAAACTCTTTCCCTCCATCGCAAGGTTCCTTCAGGGGTGATGTGAGATCATACCTAGATCCCATAATTGGGTACTTGGTATATGCAAATGCACCATTACTAGTCAATGTGTACCCTTATTTTAGTTACACTGGTAACCCCCGTGACATATCACTTCCCTATGCTCTTTTCACAGCACCAAATGTTGTGGTATGGGATGGTCAATATGGGTACCAAAATTTGTTTGATGCTATGTTGGATTCAGTACATGCAGCCATTGATAACACTAAGATTGGTTATGTGGAGGTTGTTGTATCCGAGAGTGGGTGGCCATCAGATGGAGGATTTGCTGCCACTTATGACAACGCACGCGTGTACTTAGACAATTTGGTTCGTCGTGCTAATAGAGGAAGCCCAAGAAGGCCTTCGAAGCCCACTGAGACTTATATATTTGCCATGTTCGATGAAAATCAAAAAAATCCAGAGATAGAGAAACATTTTGGGCTCTTCAATCCCAACAAACAAAAAAAATACCCATTTGGGTTTGGAGGAAAGAGGCTAGGGAAAGTTGTTATTGACGACTTCAATGCAACAACTTCCATTAAGAGTGATGTGTAA

Predicted protein sequences of Glyma15g15200

Limit To All Plant Sequences

>Glyma15g15200.1   sequence type=predicted peptide   gene model=Glyma15g15200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSLFARNQRFSLATLLLLLELLTGNLRMADAQIGVCYGMLGNNLPSANDVIGLYRSNNIKRMRLYDPNQAALEALRNSGIELILGVPNSDLQGLATNPDTSRQWVQKNVLNFWPSVKIKYVAVGNEVSPVGGSSSVAQYVLPAIQNVYQAIRAQGLHDQIKVSTSIDMTLIGNSFPPSQGSFRGDVRSYLDPIIGYLVYANAPLLVNVYPYFSYTGNPRDISLPYALFTAPNVVVWDGQYGYQNLFDAMLDSVHAAIDNTKIGYVEVVVSESGWPSDGGFAATYDNARVYLDNLVRRANRGSPRRPSKPTETYIFAMFDENQKNPEIEKHFGLFNPNKQKKYPFGFGGKRLGKVVIDDFNATTSIKSDV*

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