Report for Sequence Feature Glyma15g15100
Feature Type: gene_model
Chromosome: Gm15
Start: 11536724
stop: 11539696
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g15100
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G17000 AT
Annotation by Michelle Graham. TAIR10: ubiquitin-conjugating enzyme 32 | chr3:5797296-5799467 FORWARD LENGTH=309
SoyBase E_val: 1.00E-133 ISS
GO:0006301 GO-bp
Annotation by Michelle Graham. GO Biological Process: postreplication repair
SoyBase N/A ISS
GO:0006511 GO-bp
Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process
SoyBase N/A ISS
GO:0006635 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation
SoyBase N/A ISS
GO:0009407 GO-bp
Annotation by Michelle Graham. GO Biological Process: toxin catabolic process
SoyBase N/A ISS
GO:0016036 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation
SoyBase N/A ISS
GO:0019375 GO-bp
Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process
SoyBase N/A ISS
GO:0042631 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation
SoyBase N/A ISS
GO:0043161 GO-bp
Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process
SoyBase N/A ISS
GO:0045892 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0051788 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to misfolded protein
SoyBase N/A ISS
GO:0080129 GO-bp
Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0004842 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity
SoyBase N/A ISS
GO:0016881 GO-mf
Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity
SoyBase N/A ISS
KOG0428
KOG
Non-canonical ubiquitin conjugating enzyme 1
JGI ISS
PTHR24067 Panther
UBIQUITIN-CONJUGATING ENZYME E2
JGI ISS
PTHR24067:SF15 Panther
JGI ISS
PF00179 PFAM
Ubiquitin-conjugating enzyme
JGI ISS
UniRef100_G7JMU6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carrier protein E2 n=1 Tax=Medicago truncatula RepID=G7JMU6_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MGF5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGF5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g15100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g15100
Paralog Evidence Comments
Glyma09g04090 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g15100 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g141200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g15100
Coding sequences of Glyma15g15100
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g15100.1 sequence type=CDS gene model=Glyma15g15100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCGACAAGTACAACCTGAAGAACCCCGCCGTGAAGCGGATCCTCCAGGAGGTTAAGGAGATGCAGTCCAACCCTTCCGACGATTTCATGAGCCTCCCTCTCGAGGAAAATATATTTGAGTGGCAATTTGCGATTAGAGGGCCTCGTGATACGGAATTTGAGGGTGGTATTTATCATGGAAGGATCCAGTTGCCTTCAGAGTATCCATTCAAACCCCCTTCATTCATGTTGTTGACACCTAATGGTCGTTTCGAGACTCAAACCAAGATTTGCTTGAGCATATCAAATCATCACCCTGAGCATTGGCAACCATCATGGAGCGTGAGGACTGCTTTAGTTGCACTGATTGCGTTCATGCCTACCAACCCAAATGGTGCATTGGGATCTTTAGACTACAAGAAAGAAGAGAGGCATACACTGGCCATTAAGTCTCGTGAAGCTCCTCCAAAATTCGGGACTCCTGAACGTCAAAAGCTGATTGATGAGATACACGAGTACATGCTAAGCAAAGCACCACCTGTTCCTCAACCTAGTGCCACAGAGGCTTCTGAAGAGAACCCCAGAAATGAAGAGGCCGAGACACAGGTCAATTCACCAAATCCCGAGTCCTTACCTGCAGGAGAGGGTATTACAGATCAAGAAGTTGATGGAATTGTGGAAGAACAAGAAGTCATCCTTGCAAACCCTGCAGGAGTTGAAGTTTCAAGGGAGGTTCAACCAAGTGTTTCAAGGAATGAAGTGCTCCAAAAGTCAGACACAAGGGCTCAGAATCCTAAGCCAGAGACGAGGGTTCAGAAACATGATGATCGGTTGTTCACGTTGGCAGCTATTGGACTCACTATTGCAATTGTGGTCCTTTTGCTCAAAAAATTCCTCAAATCTACACAACATGGGGCACTTTTCTCGGATGGATCTTAA
Predicted protein sequences of Glyma15g15100
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g15100.1 sequence type=predicted peptide gene model=Glyma15g15100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MADKYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPRDTEFEGGIYHGRIQLPSEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERHTLAIKSREAPPKFGTPERQKLIDEIHEYMLSKAPPVPQPSATEASEENPRNEEAETQVNSPNPESLPAGEGITDQEVDGIVEEQEVILANPAGVEVSREVQPSVSRNEVLQKSDTRAQNPKPETRVQKHDDRLFTLAAIGLTIAIVVLLLKKFLKSTQHGALFSDGS*