Report for Sequence Feature Glyma15g15070
Feature Type: gene_model
Chromosome: Gm15
Start: 11516734
stop: 11524609
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g15070
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G66658 AT
Annotation by Michelle Graham. TAIR10: aldehyde dehydrogenase 22A1 | chr3:2095341-2099013 REVERSE LENGTH=596
SoyBase E_val: 0 ISS
GO:0000394 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation
SoyBase N/A ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0009086 GO-bp
Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0004028 GO-mf
Annotation by Michelle Graham. GO Molecular Function: 3-chloroallyl aldehyde dehydrogenase activity
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
KOG2454
KOG
Betaine aldehyde dehydrogenase
JGI ISS
PTHR11699 Panther
ALDEHYDE DEHYDROGENASE-RELATED
JGI ISS
PTHR11699:SF25 Panther
gb def: aldehyde dehydrogenase (retinol), aldy2 [halobacterium sp. nrc-1]
JGI ISS
PF00171 PFAM
Aldehyde dehydrogenase family
JGI ISS
UniRef100_A2Q2X1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Aldehyde dehydrogenase n=1 Tax=Medicago truncatula RepID=A2Q2X1_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MGF2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGF2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g15070
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g15070
Paralog Evidence Comments
Glyma09g04060 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g15070 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g140900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g15070
Coding sequences of Glyma15g15070
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g15070.1 sequence type=CDS gene model=Glyma15g15070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGTTTTGGTGGCCATTGCTCGTTCTGGCACTCGCTTTCGCCATCTGCAAGTTCCTTCTCATTCTCATTCCTCCCAAGGTTCCTTCCATCGACGTCGACGCTTCCGATGTGTTGGACGATGGGAGCCTGACGCAGGAGAACAGTTTCATATACGTGCCTCCGAGGGGAACGGCACAGCAATCGAGCGGAAAAGTTCAGTGCTATGAGCCTGCTACCATGAAATATTTGGGATATGTTCCTGCATTGACGCCGGATGAGGTCAAGGAGCAAGTGGAAAAAGTACGGAAGGCACAAAAAATGTGGGCGAAGACAAGCTTCAAGAAAAGGCGCCACTTTTTACGTATACTTTTGAAGTATATAATTAAACATCAAGCACTTATATGCGAAATATCTTCTCGCGATACTGGAAAGACAATGGTAGATGCCTCTTTAGGAGAAATAATGACAACATGTGAGAAGATAAATTGGCTACTATCAGAGGGTGAGCAGTGCCTAAAGCCTGAGTACCGGTCCTCTGGAAGAGCTATGCTTCATAAGAGATCCAAAGTAGAATTTCTCCCCCTTGGTGTTATCGGTGCCATTGTGTCGTGGAACTATCCTTTCCACAATATTTTTAACCCTATGTTGGCAGCAGTTTTTTCTGGAAATGGCATTGTGATTAAGATTTCGGAACATGCAAGTTGGTCTGGATGCTTTTACTTCCGAATCATCCAATCAGCACTTGCTGCCATAGGAGCTCCGGAGGAACTTGTTGAGGTGATAACAGGGTTTGCTGAAACAGGAGAAGCACTGGTAGCTTCTGCTGACAAAGTCATTTTTGTTGGATCCCCTGGGGTTGGCAAGATGATAATGAGCAATGCTGCTGAGACACTTATCCCAGTTACACTAGAGCTTGGTGGAAAAGATGTATTTATTGTTTGTGAAGATGCAGATGTGGATCATGTTGCTCAAGTTGCTGTCAGGGCTGCTCTGCAGTCAAGTGGGCAGAACTGTGCTGGGGCAGAGCGATTTTATGTCCACAGGAACATATATGCATCCTTTGTCAGTAAAGTTACCAAAATTATAAAATCTGTTACAGCTGGCCCACCACTTGCTGGAAAGTATGATATGGGAGCTTTGTGTATGCATGCACATTCTGAAAAGCTTGAAGCCCTTATAAATGATGCTTTAGACAAAGGAGCTGAAATTATTGCACGTGGAAGTTTTGGACATATAGGTGAAGATGCAGTTGATCAATATTTCCCCCCTACAGTGATTGTGAATGTGAATCACTCGATGAGATTAATGCAAGAAGAGGCGTTTGGACCAATCATGCCAATAATGAAATTTAGCTCTGATGAAGAGGTTGTCAGGCTTGCAAATGATTCAAAATATGGGCTTGGGTGTAATGTTTTCTCAGGCAGTCAGAGCCGTGCTAGAGAGATAGCTTCCCAGATACATTGTGGGCTTGCTGCGGTTAATGATTTTGCTGCAACATACATGTGTCAGTCCCTGCCATTTGGGGGTGTGAAAAACAGTGGATTTGGACGATTCGGTGGTGTTGAGGGTTTGCGAGCATGCTGCCTTGTAAAATCTGTTGTTGAAGATAGATGGTGGCCATTCATAAAAACTGTGATACCGAAGCCTATACAGTATCCTGTTGCAGAAAATGGATTTGAGTTCCAGGAGTCGCTTGTTGAAGCACTTTACGGGCTCAGCGTATGGGACCGTTTGCAAGCATTGGTGAACGTGTTGAAAATGCTTACTGAGCAGAACTCTACAAGTGGCAGCAGAAAAAAGAAAAATGACTAA
Predicted protein sequences of Glyma15g15070
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g15070.1 sequence type=predicted peptide gene model=Glyma15g15070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAFWWPLLVLALAFAICKFLLILIPPKVPSIDVDASDVLDDGSLTQENSFIYVPPRGTAQQSSGKVQCYEPATMKYLGYVPALTPDEVKEQVEKVRKAQKMWAKTSFKKRRHFLRILLKYIIKHQALICEISSRDTGKTMVDASLGEIMTTCEKINWLLSEGEQCLKPEYRSSGRAMLHKRSKVEFLPLGVIGAIVSWNYPFHNIFNPMLAAVFSGNGIVIKISEHASWSGCFYFRIIQSALAAIGAPEELVEVITGFAETGEALVASADKVIFVGSPGVGKMIMSNAAETLIPVTLELGGKDVFIVCEDADVDHVAQVAVRAALQSSGQNCAGAERFYVHRNIYASFVSKVTKIIKSVTAGPPLAGKYDMGALCMHAHSEKLEALINDALDKGAEIIARGSFGHIGEDAVDQYFPPTVIVNVNHSMRLMQEEAFGPIMPIMKFSSDEEVVRLANDSKYGLGCNVFSGSQSRAREIASQIHCGLAAVNDFAATYMCQSLPFGGVKNSGFGRFGGVEGLRACCLVKSVVEDRWWPFIKTVIPKPIQYPVAENGFEFQESLVEALYGLSVWDRLQALVNVLKMLTEQNSTSGSRKKKND*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
