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Report for Sequence Feature Glyma15g15056

Feature Type:gene_model
Chromosome:Gm15
Start:11504444
stop:11512128
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g15056
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G58040AT Annotation by Michelle Graham. TAIR10: homolog of yeast FIP1 [V] | chr5:23488865-23494000 FORWARD LENGTH=1196 SoyBaseE_val: 2.00E-24ISS
GO:0006397GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA processing SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0008284GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation SoyBaseN/AISS
GO:0009630GO-bp Annotation by Michelle Graham. GO Biological Process: gravitropism SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR13484Panther FIP1-LIKE 1 PROTEIN JGI ISS
PF05182PFAM Fip1 motif JGI ISS
UniRef100_G7JNW3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pre-mRNA polyadenylation factor fip1 n=1 Tax=Medicago truncatula RepID=G7JNW3_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233B041UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B041 related cluster n=1 Tax=unknown RepID=UPI000233B041 SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g15056
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g15056 not represented in the dataset
Glyma15g15056 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g15056
ParalogEvidenceComments
Glyma09g04031 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g15056 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g140800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g15056
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g15056
>Glyma15g15056.1   sequence type=CDS   gene model=Glyma15g15056   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGTTTCGACGATGACGATTTCGGCGAACTCTACGCCGTCGACATTGAAGTTCCCAATGCCATCTCAGAAGAAGAAGAAGAAGAAAAACTCGATGTAAACAGTAACATTTTGAATCTTGATAAGGATATGGACAACAACAAAGTTAATGAGGACTGTGCTGCTGAGAGTGACAGCGACGACGACGACGATGATCTGAAAATCGTGCTGAATGACGAGGATATTCCTGTCGGAGCTGATGCTTGCGACGACGACGGAGATGGCGACAATGGTGATGATAACAACGGTTCCAGATTTTTTCATCCTAAGAGTGGGAGGAGTCGAGGATTGGCGATTTTGAATAATACGAAGGCCAATGCATCCATGGGTATGGGTTCTTACATTTCATCCTTGAATAAAGGGAGGAGGAATGGTGATACCTACATCCAGAACCTTGCATTGAGCTCCTCTCGAGTGTGTCTTGCAGAAAATCCTATGGCTGTTCAATGTGGATATGGATTGGCTCTTCCTTGGTACTGGGGTATATTTGATGTAAACATTGATACATTAACGGAGAAGCCATGGAAGGTTCCTGGAGTTGACATAACAGATTACTTTAACTTCGGTTTTAATGAGAGCTCTTGGAAGCTATACCGTGCTTCATTGGAGCAACTTTGGCGAACATCCTTGCAAACTGGTATTTCTGTTGATGACTCTACAAACTGGAATCAGGAAGCCATGAGAGAGCAAACTGATCAAGTTGTGTCAGGAAATGCATTTTTTCCTTCATCAGATTGTGGATTGCCAAAAGGCAGAGCAATTCAGGTTGAGGACAGCATGGTTGAACGGAAACCAACCATGGATGTAAGGCGTCCACGTAATAGGGATTTTAATGTTATAGAGATCAAGCTGCTTGACTCCTCTGATGACTGTTCTGGTTCTGGCAATAGCACTGTAATGGATGCATCATTAGAAGGGGAATCTATGGCAGGTAGTAAGAGAAATGCTCTCAATTCTTCTGCTGAACTCAATGAAGTGCTGTCTGAAGATCAGTTGGAAGATGTGAAAAAAGCAGAGGACTCTTCTCTTCAGAGAAGAAGTGGGCCAATTCCTGGTGTAGATGGAGATGAGCATCGGGATCAAGCAGACCAACATTCTGAAGATACTGCAGAAGTGCCGGAGGGAGAAACAGAAGCAGAGGAAGGTGGTGGCATAGACACATGTAGTTCTTATCCATGTTGGACTGAATCAGAATTGTCTCTTGGAGATCAAGAGCACAGCCTGACTTCCTATACTGATGGTGATTCTGAGGCAACGGATAACAGTGTACATGTTGATAATGATAAAAGTCTTAGCCCTTTAAAAAGGAAATCGTTGAATTGTGTTACTGAAATGAAGGAGTCTTTGGCACTTTATTGGAAGAACTCAAAGAACAACAGTATCAATAAAAAAGCAGTAAGTGCAGCTTATAATTCAAGAACTAGAGGTCAATTCAGAAAGGAATGGAGGAACCAAAGTGGTGGATATGAACCTCATAGTTATGATATGAATAAGCACACTGAAAATGATAATGATGTCTCCATCCTCAAGTCAAGTGCAAGGAATCTGTCTCTGTTGGCTCACCGACCCGTTGATTATGGCAGACATAAAGACCAACTGCAAGTTTTTGGCAGTCATAAAAGAAGAGATCTTTCATGTAATAGGGAAACAAAACAATCCTACTATTATGGCGGTGAAAAGGTCATTGATGAGTTGGTTTCATGGCGCTCTAAATATTATCACGAAGATCGAGAAAGCTTCAGGGAGAATACAAATCGATATGACAGAAAAAATGGGGATGTGGGGGATTATTTTTTTGAACCAGGTCCTGGATTTGCAGATAGTGAGGACAGAGATAGAGATTGGTATCATCTTGGTTGTGGGCACTCTTCTGATGACCTGTGTCCTTGCTCCTACAGGGAGTCAAGGCAGTTTCCTCCAAAGCATTCATCTTTTCCTGATAAAGAGAGGTATACTCCAAGGAAAAGAATGGATGAAAAATCCCTTATAGAAAGAAATTGCATTGATGATTTTGATGAATGTGAGTTTGAGTTTCTAAACAAGAGCTATAGAATGTCCACTGTTGCTGAGAGAGAACAGGAATTTTTAGACAATAATCGTGAAGAGCAGTTTCCACATATTTATAGAGATTGGAGAAGATCTGTCCGTAGGGGAAGACGTTTTGACAAGCCCCCTTTAGTTTTGAATAACTTGTGTTCTGGGACAATGGAAGTCGAAGATAATTGTCAGAAATATACACACTTCCGGACTTCAAATTTTAAGCATCGTAGACAATCTTATACAGATTCAGTGAAAAATTATGCATATGGGTCAAGAGTAAATGGAAATCTTGGGGGTTCGGGGAGAGATAAGCATGCTAGGGACAACAGAGACAGCAACTGGTCGTGTGATTATACTGACACTGCTGAAGATGAAGATTTCCGAATTTGTCCTGTAAAAGAGTATCAATTTTATAGGTCCCCATCTAAGTTCCTGAACTGGACAGAGGATGAAATTATTTTTATGCGTCATGAAACTCATGCAACATCTCTGTTTACTAAGGTTCAGAGTGATGATTTGCCATTGCAGCAGCATCAGCTAAGTATGCCAAAACGAGATAATGAGAAATATTTTAAAGGTAGCTCTAAGATTATGTGCAGAAGTAAGGGTGGGCAGGCAGTGCTGAGATGCAGGAAATCAGTTGACTTGATTCATGGGGAAGGAAAGTCTCAAGTGAGAAGTTCCAGAGTCTCGTGCAATGGAAGGCTTGAAAATGTCAACCAGGGGATTGCTAAGAAACGGAAGAGAGCTTCAGTGGGTTTTGATGAATCTAATAAAAATACCTTCAAATTTGACTCCCCAAAATACGAGAGCAACCTCAAAAGTAAGAAATGGGTGCAGAACCTTCAAGATCAAGCGCAGAAAGAAAGCTCGGACATCGAGGAAGGTCAGATTGTTGCAGAAGAACCATACATGGAGAAGGTTTCTGTATCCAGAAGAGATGCTTCTGAAGGTCCAGCAGTGACTGACAGTGTGAACAAGAAGAGAATGTCACAAAATGAAAATAGTTCTGACCAATATATAGGTGGTTACGACAGTCAAAGGATTCTTGATTCATTAGCCAAGATGGAGAAACGTAGGGAGCGCTTTAAGCAACCAATGACAATGAAAAAAGAAGCAGAAGAGAGTTTGAAGCTTAACAATGATTCCATTGTAGATACAGGTGAAATGAAGCAACACAGACCAACTCGAAAGAGGCGTTGGGTTGGTAATTAG
Predicted protein sequences of Glyma15g15056
>Glyma15g15056.1   sequence type=predicted peptide   gene model=Glyma15g15056   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGFDDDDFGELYAVDIEVPNAISEEEEEEKLDVNSNILNLDKDMDNNKVNEDCAAESDSDDDDDDLKIVLNDEDIPVGADACDDDGDGDNGDDNNGSRFFHPKSGRSRGLAILNNTKANASMGMGSYISSLNKGRRNGDTYIQNLALSSSRVCLAENPMAVQCGYGLALPWYWGIFDVNIDTLTEKPWKVPGVDITDYFNFGFNESSWKLYRASLEQLWRTSLQTGISVDDSTNWNQEAMREQTDQVVSGNAFFPSSDCGLPKGRAIQVEDSMVERKPTMDVRRPRNRDFNVIEIKLLDSSDDCSGSGNSTVMDASLEGESMAGSKRNALNSSAELNEVLSEDQLEDVKKAEDSSLQRRSGPIPGVDGDEHRDQADQHSEDTAEVPEGETEAEEGGGIDTCSSYPCWTESELSLGDQEHSLTSYTDGDSEATDNSVHVDNDKSLSPLKRKSLNCVTEMKESLALYWKNSKNNSINKKAVSAAYNSRTRGQFRKEWRNQSGGYEPHSYDMNKHTENDNDVSILKSSARNLSLLAHRPVDYGRHKDQLQVFGSHKRRDLSCNRETKQSYYYGGEKVIDELVSWRSKYYHEDRESFRENTNRYDRKNGDVGDYFFEPGPGFADSEDRDRDWYHLGCGHSSDDLCPCSYRESRQFPPKHSSFPDKERYTPRKRMDEKSLIERNCIDDFDECEFEFLNKSYRMSTVAEREQEFLDNNREEQFPHIYRDWRRSVRRGRRFDKPPLVLNNLCSGTMEVEDNCQKYTHFRTSNFKHRRQSYTDSVKNYAYGSRVNGNLGGSGRDKHARDNRDSNWSCDYTDTAEDEDFRICPVKEYQFYRSPSKFLNWTEDEIIFMRHETHATSLFTKVQSDDLPLQQHQLSMPKRDNEKYFKGSSKIMCRSKGGQAVLRCRKSVDLIHGEGKSQVRSSRVSCNGRLENVNQGIAKKRKRASVGFDESNKNTFKFDSPKYESNLKSKKWVQNLQDQAQKESSDIEEGQIVAEEPYMEKVSVSRRDASEGPAVTDSVNKKRMSQNENSSDQYIGGYDSQRILDSLAKMEKRRERFKQPMTMKKEAEESLKLNNDSIVDTGEMKQHRPTRKRRWVGN*






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