Glyma15g15020 - SoyBase

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Report for Sequence Feature Glyma15g15020

Feature Type:	gene_model
Chromosome:	Gm15
Start:	11456851
stop:	11463429
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g15020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06650	AT	Annotation by Michelle Graham. TAIR10: ATP-citrate lyase B-1 \| chr3:2079247-2082633 REVERSE LENGTH=608	SoyBase	E_val: 0	ISS
GO:0006085	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetyl-CoA biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0044262	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009346	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: citrate lyase complex	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003878	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP citrate synthase activity	SoyBase	N/A	ISS
GO:0004775	GO-mf	Annotation by Michelle Graham. GO Molecular Function: succinate-CoA ligase (ADP-forming) activity	SoyBase	N/A	ISS
GO:0046912	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	SoyBase	N/A	ISS
KOG1254	KOG	ATP-citrate lyase	JGI		ISS
PTHR26330	Panther	FAMILY NOT NAMED	JGI		ISS
PF00285	PFAM	Citrate synthase	JGI		ISS
PF00549	PFAM	CoA-ligase	JGI		ISS
UniRef100_I1MGE7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MGE7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q93YH4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP citrate lyase a-subunit n=1 Tax=Lupinus albus RepID=Q93YH4_LUPAL	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g15020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g15020

Paralog	Evidence	Comments
Glyma09g04000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g15020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g140300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g15020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g15020

Limit To All Plant Sequences

>Glyma15g15020.1   sequence type=CDS   gene model=Glyma15g15020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCGGACAACTATTCTCCCGCACTACACAGGCTTTGTTTTACAACTATAAGCAACTTCCCATACAGCGGATGCTTGATTTTGACTTCCTTTGCGGCAGGGAAACACCATCAGTTGCTGGAATAATTAACCCTGGTTCTGAGGGATTTCAAAAACTTTTTTTTGGTCAGGAGGAAATTGCCATCCCAGTTCATGCCACCATTGAAGCAGCTTGTGCTGCACATCCTACTGCTGATGTCTTCATCAACTTTGCTTCATTTAGAAGTGCTGCAGCATCATCCATGGCAGCTTTGAAGCAGCCAACAATTAGAGTTGTTGCTATTATTGCTGAAGGAGTACCCGAGTCAGACACTAAGCAATTGATTGCATATGCCCGATCAAACAATAAGGTTGTTATTGGTCCAGCCACTGTTGGAGGCATTCAAGCAGGTGCTTTTAAAATTGGTGACACAGCTGGAACAATTGACAATATAATTCAGTGCAAGCTCTACAGGCCTGGATCTGTTGGATTTGTTTCTAAATCTGGTGGGATGTCCAATGAACTCTACAACACTATTGCCCGTGTAACTGATGGGATTTATGAAGGCATTGCTATTGGAGGAGATGTTTTCCCTGGTTCCACACTTTCTGACCATGTTTTACGGTTTAACAACATGCCACAGGTTAAAATGATGGTAGTACTTGGGGAACTTGGTGGGCGTGATGAGTATTCCTTAGTGGAGGCCTTAAAACAAGGAAAGGTATCCAAACCGGTTGTTGCCTGGGTCAGTGGCACATGTGCACGACTCTTCAAATCTGAAGTACAATTTGGTCATGCAGGAGCCAAAAGTGGTGGTGAGTTAGAGTCTGCTCAAGCAAAGAATCAGGCACTAAGGGACGCTGGAGCTGTTGTTCCCACATCATATGAAGCTTTTGAAGCTGCAATTAGGGAAACATTTGATAAATTGGTTGAAGAAGGGAAGATCACACCAATCAAGGAAATCACACCTCCACCAATCCCTGAAGACCTTAGTACTGCAATTAAGAGTGGAAAAGTCCGTGCTCCAACTCATATTATTTCCACCATTTCTGATGACAGAGGAGAGGAGCCATGCTATGCTGGTGTACCCATGTCTTCCATTATCGAAAAAGGTTATGGTGTTGGTGATGTTATCTCTCTTTTGTGGTTTAAACGAAGCCTTCCCCGTTACTGTACTCAATTTATTGAGATATGCATCATGCTATGTGCCGACCATGGTCCTTGTGTCTCTGGTGCTCACAATACTATTGTGACAGCAAGGGCAGGGAAAGACCTAGTTTCCAGTCTCGTATCAGGTTTGCTAACAATTGGTCCTCGATTTGGGGGTGCCATCGATGATGCTGCTCGCTACTTCAAGGATGCTCATGACAGGGCACTTACTCCTTATGAGTTTGTTGAAGGTATGAAAAAGAAGGGAATTCGTGTGGCAGGAATAGGGCACAGGATCAAGAATAGGGACAACAAAGATAAGAGAGTTGAGCTGCTACAGAAGTTTGCACGAACACATTTTCCTTCCGTGAAATACATGGAATATGCTGTTCAAGTTGAGACCTACACACTCACAAAGGCAAATAATTTAGTTCTTAACGTAGATGGTGCAATTGGATCTCTTTTCTTGGATCTTCTTGCTGGTAGTGGAATGTTCACCAAACAAGAGATTGATGAAATTGTGGAGATTGGCTATCTGAATGGCCTCTTTGTGCTGGCACGCTCCATTGGTCTGATTGGACACACCTTTGACCAAAAGCGATTGAAGCAACCACTTTACCGTCACCCATGGGAGGATGTTCTCTACACAAAGTGA

Predicted protein sequences of Glyma15g15020

Limit To All Plant Sequences

>Glyma15g15020.1   sequence type=predicted peptide   gene model=Glyma15g15020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATGQLFSRTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHATIEAACAAHPTADVFINFASFRSAAASSMAALKQPTIRVVAIIAEGVPESDTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIQCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNMPQVKMMVVLGELGGRDEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGELESAQAKNQALRDAGAVVPTSYEAFEAAIRETFDKLVEEGKITPIKEITPPPIPEDLSTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIIEKGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAHDRALTPYEFVEGMKKKGIRVAGIGHRIKNRDNKDKRVELLQKFARTHFPSVKYMEYAVQVETYTLTKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK*

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