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Report for Sequence Feature Glyma15g15010

Feature Type:gene_model
Chromosome:Gm15
Start:11441090
stop:11449453
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g15010
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G49460AT Annotation by Michelle Graham. TAIR10: ATP citrate lyase subunit B 2 | chr5:20055048-20058195 FORWARD LENGTH=608 SoyBaseE_val: 0ISS
GO:0006084GO-bp Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process SoyBaseN/AISS
GO:0006085GO-bp Annotation by Michelle Graham. GO Biological Process: acetyl-CoA biosynthetic process SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0016126GO-bp Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process SoyBaseN/AISS
GO:0016132GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process SoyBaseN/AISS
GO:0016926GO-bp Annotation by Michelle Graham. GO Biological Process: protein desumoylation SoyBaseN/AISS
GO:0044262GO-bp Annotation by Michelle Graham. GO Biological Process: cellular carbohydrate metabolic process SoyBaseN/AISS
GO:0050665GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009346GO-cc Annotation by Michelle Graham. GO Cellular Compartment: citrate lyase complex SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0003878GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP citrate synthase activity SoyBaseN/AISS
GO:0004775GO-mf Annotation by Michelle Graham. GO Molecular Function: succinate-CoA ligase (ADP-forming) activity SoyBaseN/AISS
GO:0046912GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer SoyBaseN/AISS
KOG1254 KOG ATP-citrate lyase JGI ISS
PTHR26330Panther FAMILY NOT NAMED JGI ISS
PF00285PFAM Citrate synthase JGI ISS
PF00549PFAM CoA-ligase JGI ISS
UniRef100_A6MZ92UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATP citrate lyase alpha subunit n=1 Tax=Glycyrrhiza uralensis RepID=A6MZ92_GLYUR SoyBaseE_val: 0ISS
UniRef100_I1MGE6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGE6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g15010
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g15010 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g140200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g15010
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g15010
>Glyma15g15010.1   sequence type=CDS   gene model=Glyma15g15010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTGGACAACTATTCTCCCGTACTACACAATCTTTATTTTACAACTACAAGCAACTTTACATCCAGAGGATGCTTGATTTTGACTTCCTTTGTGGCAGGGAAACACCATCAGTTTCTGGAATAATTAGCCCTGGTTCTGAGGGATTTCAAAAACTTTTTTTTGGTCAGGAGGAAATTGCCATCCCAGTTCATGCTACCATTGAAGCAGCTTGTGCTGCACATCCTACTGCTGATGTCTTCATCAACTTTGCTTCATTTAGAAGCGCTGCAGCAGCATCCATGGCTGCCTTGAAGCAGCCAACGATCAGAGTTGTTGCTATTATTGCTGAAGGAGTACCTGAGTCAGACACTAAGCAATTGGTTGCGTATGCCCGGGCAAACAATAAGGTTGTTATTGGTCCAGCCACTGATGGAGGCATTCAAGCAGGTGCTTTTAAAATTGGCGACACAGCTGGAACAATTGACAATATAATTCACTGCAAGCTCTATAGGCCAGGATCTGTTGGATTTGTATCTAAATCTGGGGGGATGTCCAATGAATTATATAACACTATCGCCCGCGTAACTGATGGGATTTATGAAGGCATTGACATTGGAGGAGATGCTTTCCCAGGCTCCACACTTTCTGACCATGTTTTACGGTTTAACAACATACCACAGATTAAAATGATGGTAGTACTTGGAGAACTTGGTGGGCGTGATGAGTATTCCTTAGTGGACGCCCTAAAACAAGGAAAAGTATCAAAACCGGTTGTGGCCTGGGTTGATCATGAAGGAGCTAAAAGTGGCAGTCAGTTGGAGTCTGCTCAAGCAAAGAATCAGGCACTAAGGGACGCTGGAGCTGTTGTTCCCACATCATATGAAACTTTTGAAGCTGCAATTAAGGAAGCATTTGACAAGTTGGTTGAAGAAGGGAATATCACACCAGTCAAGGAAACCACTCCTCCACCAATCCCCGAGGACCTTAACTCTGCAATCAAGAGTGGAAAAGTCCGTGCTCCAACTCATATTATTTCCACCATTTCTGATGAGAGAGGTGAGGAGCAATGCTATGCTGGTGTATCCATGTCTTCCATTATTGAAGAAGGTTATGGTGTTGGTGGTGTGGTCTCTCTTTTATGGTTTAAACGCAGCCTTCCCCATTACTGTACTCAATTTATTGAGATGTGCATCATGCTATGTGCCGACCATGGTCCTTGTGCCTCAGGTGCTCACAATGCTATCGTGACAGCAAGGGCCGGGAAGGACCTAATTTCCAGTATTGTATCAGGTATGCTTACAATTGGTCCTCGATTTGGGGGTGCCATTGATGATGCTGCTCGCTACTTCAAGGATGCTCATGACAGGGGGCTTACGCCTTATGAGTTTGTTGAAGGTATGAAAAAAAAGAGGGATCGTGTGCAGGAATAG
Predicted protein sequences of Glyma15g15010
>Glyma15g15010.1   sequence type=predicted peptide   gene model=Glyma15g15010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATGQLFSRTTQSLFYNYKQLYIQRMLDFDFLCGRETPSVSGIISPGSEGFQKLFFGQEEIAIPVHATIEAACAAHPTADVFINFASFRSAAAASMAALKQPTIRVVAIIAEGVPESDTKQLVAYARANNKVVIGPATDGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIDIGGDAFPGSTLSDHVLRFNNIPQIKMMVVLGELGGRDEYSLVDALKQGKVSKPVVAWVDHEGAKSGSQLESAQAKNQALRDAGAVVPTSYETFEAAIKEAFDKLVEEGNITPVKETTPPPIPEDLNSAIKSGKVRAPTHIISTISDERGEEQCYAGVSMSSIIEEGYGVGGVVSLLWFKRSLPHYCTQFIEMCIMLCADHGPCASGAHNAIVTARAGKDLISSIVSGMLTIGPRFGGAIDDAARYFKDAHDRGLTPYEFVEGMKKKRDRVQE*






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