Glyma15g15010 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma15g15010): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma15g15010): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma15g15010

Feature Type:	gene_model
Chromosome:	Gm15
Start:	11441090
stop:	11449453
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g15010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49460	AT	Annotation by Michelle Graham. TAIR10: ATP citrate lyase subunit B 2 \| chr5:20055048-20058195 FORWARD LENGTH=608	SoyBase	E_val: 0	ISS
GO:0006084	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process	SoyBase	N/A	ISS
GO:0006085	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetyl-CoA biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0016926	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein desumoylation	SoyBase	N/A	ISS
GO:0044262	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0050665	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009346	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: citrate lyase complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003878	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP citrate synthase activity	SoyBase	N/A	ISS
GO:0004775	GO-mf	Annotation by Michelle Graham. GO Molecular Function: succinate-CoA ligase (ADP-forming) activity	SoyBase	N/A	ISS
GO:0046912	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	SoyBase	N/A	ISS
KOG1254	KOG	ATP-citrate lyase	JGI		ISS
PTHR26330	Panther	FAMILY NOT NAMED	JGI		ISS
PF00285	PFAM	Citrate synthase	JGI		ISS
PF00549	PFAM	CoA-ligase	JGI		ISS
UniRef100_A6MZ92	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP citrate lyase alpha subunit n=1 Tax=Glycyrrhiza uralensis RepID=A6MZ92_GLYUR	SoyBase	E_val: 0	ISS
UniRef100_I1MGE6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGE6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g15010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g15010 not represented in the dataset	Glyma15g15010 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g15010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g140200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g15010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g15010

Limit To All Plant Sequences

>Glyma15g15010.1   sequence type=CDS   gene model=Glyma15g15010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTGGACAACTATTCTCCCGTACTACACAATCTTTATTTTACAACTACAAGCAACTTTACATCCAGAGGATGCTTGATTTTGACTTCCTTTGTGGCAGGGAAACACCATCAGTTTCTGGAATAATTAGCCCTGGTTCTGAGGGATTTCAAAAACTTTTTTTTGGTCAGGAGGAAATTGCCATCCCAGTTCATGCTACCATTGAAGCAGCTTGTGCTGCACATCCTACTGCTGATGTCTTCATCAACTTTGCTTCATTTAGAAGCGCTGCAGCAGCATCCATGGCTGCCTTGAAGCAGCCAACGATCAGAGTTGTTGCTATTATTGCTGAAGGAGTACCTGAGTCAGACACTAAGCAATTGGTTGCGTATGCCCGGGCAAACAATAAGGTTGTTATTGGTCCAGCCACTGATGGAGGCATTCAAGCAGGTGCTTTTAAAATTGGCGACACAGCTGGAACAATTGACAATATAATTCACTGCAAGCTCTATAGGCCAGGATCTGTTGGATTTGTATCTAAATCTGGGGGGATGTCCAATGAATTATATAACACTATCGCCCGCGTAACTGATGGGATTTATGAAGGCATTGACATTGGAGGAGATGCTTTCCCAGGCTCCACACTTTCTGACCATGTTTTACGGTTTAACAACATACCACAGATTAAAATGATGGTAGTACTTGGAGAACTTGGTGGGCGTGATGAGTATTCCTTAGTGGACGCCCTAAAACAAGGAAAAGTATCAAAACCGGTTGTGGCCTGGGTTGATCATGAAGGAGCTAAAAGTGGCAGTCAGTTGGAGTCTGCTCAAGCAAAGAATCAGGCACTAAGGGACGCTGGAGCTGTTGTTCCCACATCATATGAAACTTTTGAAGCTGCAATTAAGGAAGCATTTGACAAGTTGGTTGAAGAAGGGAATATCACACCAGTCAAGGAAACCACTCCTCCACCAATCCCCGAGGACCTTAACTCTGCAATCAAGAGTGGAAAAGTCCGTGCTCCAACTCATATTATTTCCACCATTTCTGATGAGAGAGGTGAGGAGCAATGCTATGCTGGTGTATCCATGTCTTCCATTATTGAAGAAGGTTATGGTGTTGGTGGTGTGGTCTCTCTTTTATGGTTTAAACGCAGCCTTCCCCATTACTGTACTCAATTTATTGAGATGTGCATCATGCTATGTGCCGACCATGGTCCTTGTGCCTCAGGTGCTCACAATGCTATCGTGACAGCAAGGGCCGGGAAGGACCTAATTTCCAGTATTGTATCAGGTATGCTTACAATTGGTCCTCGATTTGGGGGTGCCATTGATGATGCTGCTCGCTACTTCAAGGATGCTCATGACAGGGGGCTTACGCCTTATGAGTTTGTTGAAGGTATGAAAAAAAAGAGGGATCGTGTGCAGGAATAG

Predicted protein sequences of Glyma15g15010

Limit To All Plant Sequences

>Glyma15g15010.1   sequence type=predicted peptide   gene model=Glyma15g15010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATGQLFSRTTQSLFYNYKQLYIQRMLDFDFLCGRETPSVSGIISPGSEGFQKLFFGQEEIAIPVHATIEAACAAHPTADVFINFASFRSAAAASMAALKQPTIRVVAIIAEGVPESDTKQLVAYARANNKVVIGPATDGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIDIGGDAFPGSTLSDHVLRFNNIPQIKMMVVLGELGGRDEYSLVDALKQGKVSKPVVAWVDHEGAKSGSQLESAQAKNQALRDAGAVVPTSYETFEAAIKEAFDKLVEEGNITPVKETTPPPIPEDLNSAIKSGKVRAPTHIISTISDERGEEQCYAGVSMSSIIEEGYGVGGVVSLLWFKRSLPHYCTQFIEMCIMLCADHGPCASGAHNAIVTARAGKDLISSIVSGMLTIGPRFGGAIDDAARYFKDAHDRGLTPYEFVEGMKKKRDRVQE*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain