Glyma15g14860 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g14860

Feature Type:	gene_model
Chromosome:	Gm15
Start:	11291206
stop:	11294060
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g14860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49520	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 48 \| chr5:20090890-20092867 FORWARD LENGTH=399	SoyBase	E_val: 2.00E-53	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0052542	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_G7IMS4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor n=1 Tax=Medicago truncatula RepID=G7IMS4_MEDTR	SoyBase	E_val: 8.00E-83	ISS
UniRef100_I1MGD4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGD4_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma15g14860

Locus	Gene Symbol	Protein Name
	WRKY151	WRKY Transcription Factor

Expression Patterns of Glyma15g14860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g14860

Paralog	Evidence	Comments
Glyma09g03900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g14860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g139000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g14860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g14860

Limit To All Plant Sequences

>Glyma15g14860.2   sequence type=transcript   gene model=Glyma15g14860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCTAATCCCCAAACTATCCTTCTCTCTCTCTTCCTTTCTGTCTATTTTTATATCTTTTGTAATAACAAGTGGTAGAATTTAGAGGCACACTACCTTCTGAGTTCGGAGCACAAAAGCAAGATCTCAAAACATAAATATAAAGGGAAAAAAAAATAGCGAAGAATATGTGCCACGCTTTGCGTTGTTGATATATAGCCCAACCAATGGCGGAGGAGAAAAGAGAAGAGGAAGTAGCGCACCCCAACAACTCATCATCCACCACCATGCCATTTTCCGATGAGATTCCCAACAACAACAACTTGATGATGACTTTCCCTTTCCAAGTACCACCCACCATCTTCGACGTCATGATGATGCCTTCGTCTTCTTCTTCCTTCATTGACCTGCTCGGCGTGCAGGACTACAACGCGCCGTTATTCGATTGCCTTCCCGGCGGCGGATACCGCCCTGCGCCGTCTCCGGCGAGCTCCAACGTCCCAGACTCCTCCGAGGTGTTGAACACGCCGGCTGCGTCGCCTAATTTGTCGTCGATTTCGTCGTCGTCGAATGAGGCTACGGTCAATAACAACGCCGAACAGAGTTTGAAACCTGGGAATGACCAAGAAGAAGCAGAAGCAGAGGAAGAAGGTGGTAATGGAGGCAGAGGAGATGACCAAGATCAAGACAAGACTAAGAAACAGCTGAAACCGAAGAAGAAGAACCAAAAGAAGCAAAGAGAACCGAGATTTGCGTTCATGACAAAGAGCGAGGTTGATCACCTAGACGATGGTTATAAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTATCCCAGGAGCTACTACCGTTGCACCAGCGCGGGTTGCGGCGTTAAGAAGCGCGTGGAGCGTTCCTCCGACGACCCTTCCATCGTTGTTACAACCTACGAAGGGCAGCACAGGCACCCGTGCCCTGCTTCGGCACGGGCTAGCTTCGGCTTTGTGTCCGAACCCAGCAGCTTCGGATACGCCGGTTCGTTTGGTCCCTCACACTTTATGCTGCCACATCAGCACCACCAGCAAGCACAATCTTCGGCTTTGATGTATAATAACTCCACCACCCCTCCTTTGAATGTTGTTAGCTCCAGTAGTACTAGTAACTACATGAACACGACGTCGTTTGGTGGATTTGTTCAGGATCACGCGAACCGTCATGGTTTTGGGCATGAGGCTTTGTTGAGGGACAATGGGCTTCTTCAGGACATTATTGTGCCAACTCAGCTTGGTATGGTTTGTAATGCTCTCTAACTCGATTGGTGTTGCGTCTGAGGGGTTTTGATTTCTGTTTTAGAGGGTTAATGTGGAGAAAACTACCTCGGCTAGATTTGAGTTCATATGAAACCTTTTTGGAGGTTAACTTTTAAAATGACTATTGCCCTTGTAGCTTATTATGGAGGTTTCTGATTTTGTTAATTTAATTATTATTTTTTATGGGATATTCTTTGTAATTAACTAGAGATTTGTTGGATGTTCAGACATTTGCTGTTTC

Coding sequences of Glyma15g14860

Limit To All Plant Sequences

>Glyma15g14860.1   sequence type=CDS   gene model=Glyma15g14860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGGAGAAAAGAGAAGAGGAAGTAGCGCACCCCAACAACTCATCATCCACCACCATGCCATTTTCCGATGAGATTCCCAACAACAACAACTTGATGATGACTTTCCCTTTCCAAGTACCACCCACCATCTTCGACGTCATGATGATGCCTTCGTCTTCTTCTTCCTTCATTGACCTGCTCGGCGTGCAGGACTACAACGCGCCGTTATTCGATTGCCTTCCCGGCGGCGGATACCGCCCTGCGCCGTCTCCGGCGAGCTCCAACGTCCCAGACTCCTCCGAGGTGTTGAACACGCCGGCTGCGTCGCCTAATTTGTCGTCGATTTCGTCGTCGTCGAATGAGGCTACGGTCAATAACAACGCCGAACAGAGTTTGAAACCTGGGAATGACCAAGAAGAAGCAGAAGCAGAGGAAGAAGGTGGTAATGGAGGCAGAGGAGATGACCAAGATCAAGACAAGACTAAGAAACAGCTGAAACCGAAGAAGAAGAACCAAAAGAAGCAAAGAGAACCGAGATTTGCGTTCATGACAAAGAGCGAGGTTGATCACCTAGACGATGGTTATAAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTATCCCAGGAGCTACTACCGTTGCACCAGCGCGGGTTGCGGCGTTAAGAAGCGCGTGGAGCGTTCCTCCGACGACCCTTCCATCGTTGTTACAACCTACGAAGGGCAGCACAGGCACCCGTGCCCTGCTTCGGCACGGGCTAGCTTCGGCTTTGTGTCCGAACCCAGCAGCTTCGGATACGCCGGTTCGTTTGGTCCCTCACACTTTATGCTGCCACATCAGCACCACCAGCAAGCACAATCTTCGGCTTTGATGTATAATAACTCCACCACCCCTCCTTTGAATGTTGTTAGCTCCAGTAGTACTAGTAACTACATGAACACGACGTCGTTTGGTGGATTTGTTCAGGATCACGCGAACCGTCATGGTTTTGGGCATGAGGCTTTGTTGAGGGACAATGGGCTTCTTCAGGACATTATTGTGCCAACTCAGGTGAGGAAGGAGGAGAAGGATTGA

>Glyma15g14860.2   sequence type=CDS   gene model=Glyma15g14860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGGAGAAAAGAGAAGAGGAAGTAGCGCACCCCAACAACTCATCATCCACCACCATGCCATTTTCCGATGAGATTCCCAACAACAACAACTTGATGATGACTTTCCCTTTCCAAGTACCACCCACCATCTTCGACGTCATGATGATGCCTTCGTCTTCTTCTTCCTTCATTGACCTGCTCGGCGTGCAGGACTACAACGCGCCGTTATTCGATTGCCTTCCCGGCGGCGGATACCGCCCTGCGCCGTCTCCGGCGAGCTCCAACGTCCCAGACTCCTCCGAGGTGTTGAACACGCCGGCTGCGTCGCCTAATTTGTCGTCGATTTCGTCGTCGTCGAATGAGGCTACGGTCAATAACAACGCCGAACAGAGTTTGAAACCTGGGAATGACCAAGAAGAAGCAGAAGCAGAGGAAGAAGGTGGTAATGGAGGCAGAGGAGATGACCAAGATCAAGACAAGACTAAGAAACAGCTGAAACCGAAGAAGAAGAACCAAAAGAAGCAAAGAGAACCGAGATTTGCGTTCATGACAAAGAGCGAGGTTGATCACCTAGACGATGGTTATAAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTATCCCAGGAGCTACTACCGTTGCACCAGCGCGGGTTGCGGCGTTAAGAAGCGCGTGGAGCGTTCCTCCGACGACCCTTCCATCGTTGTTACAACCTACGAAGGGCAGCACAGGCACCCGTGCCCTGCTTCGGCACGGGCTAGCTTCGGCTTTGTGTCCGAACCCAGCAGCTTCGGATACGCCGGTTCGTTTGGTCCCTCACACTTTATGCTGCCACATCAGCACCACCAGCAAGCACAATCTTCGGCTTTGATGTATAATAACTCCACCACCCCTCCTTTGAATGTTGTTAGCTCCAGTAGTACTAGTAACTACATGAACACGACGTCGTTTGGTGGATTTGTTCAGGATCACGCGAACCGTCATGGTTTTGGGCATGAGGCTTTGTTGAGGGACAATGGGCTTCTTCAGGACATTATTGTGCCAACTCAGCTTGGTATGGTTTGTAATGCTCTCTAA

Predicted protein sequences of Glyma15g14860

Limit To All Plant Sequences

>Glyma15g14860.1   sequence type=predicted peptide   gene model=Glyma15g14860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEKREEEVAHPNNSSSTTMPFSDEIPNNNNLMMTFPFQVPPTIFDVMMMPSSSSSFIDLLGVQDYNAPLFDCLPGGGYRPAPSPASSNVPDSSEVLNTPAASPNLSSISSSSNEATVNNNAEQSLKPGNDQEEAEAEEEGGNGGRGDDQDQDKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYKWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSDDPSIVVTTYEGQHRHPCPASARASFGFVSEPSSFGYAGSFGPSHFMLPHQHHQQAQSSALMYNNSTTPPLNVVSSSSTSNYMNTTSFGGFVQDHANRHGFGHEALLRDNGLLQDIIVPTQVRKEEKD*

>Glyma15g14860.2   sequence type=predicted peptide   gene model=Glyma15g14860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEKREEEVAHPNNSSSTTMPFSDEIPNNNNLMMTFPFQVPPTIFDVMMMPSSSSSFIDLLGVQDYNAPLFDCLPGGGYRPAPSPASSNVPDSSEVLNTPAASPNLSSISSSSNEATVNNNAEQSLKPGNDQEEAEAEEEGGNGGRGDDQDQDKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYKWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSDDPSIVVTTYEGQHRHPCPASARASFGFVSEPSSFGYAGSFGPSHFMLPHQHHQQAQSSALMYNNSTTPPLNVVSSSSTSNYMNTTSFGGFVQDHANRHGFGHEALLRDNGLLQDIIVPTQLGMVCNAL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain