Glyma15g14840 - SoyBase

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Report for Sequence Feature Glyma15g14840

Feature Type:	gene_model
Chromosome:	Gm15
Start:	11281809
stop:	11285053
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g14840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13340	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr3:4332370-4334603 FORWARD LENGTH=447	SoyBase	E_val: 4.00E-135	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005834	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG0315	KOG	G-protein beta subunit-like protein (contains WD40 repeats)	JGI		ISS
PTHR22847	Panther	WD40 REPEAT PROTEIN	JGI		ISS
PTHR22847:SF188	Panther	WD-40 REPEAT FAMILY PROTEIN	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_B9SGX2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9SGX2_RICCO	SoyBase	E_val: 1.00E-138	ISS
UniRef100_I1MGD1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MGD1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g14840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g14840 not represented in the dataset	Glyma15g14840 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g14840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g138800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g14840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g14840

Limit To All Plant Sequences

>Glyma15g14840.5   sequence type=transcript   gene model=Glyma15g14840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGTGAATAAGAAGGTGGCTGGCCTAGTTCTCTTGTAAAGATTAGTGATTCGTCTATAATTCGTCGTCTTGTGTAGAAATGTCAGAGGCCGTTAGACTATGCTCAAAGGTCTCATCTTTCTCTCATTCCCACGCCAATGATGCCCCTTCCTTCTCCAATAATAATAAATAGGCTACCTAAGGAACATATTGGTGATGCGGACACATGCACTGCTTTTGAGTGTTTTCTTTGGCTCTACTGCATTTTGAGCAGCATCGGGAGAAAATCTCTCAAAGGACCACGAGCCTGAAATGGATAACGATTATGAAACTATTTCATTCCTGATAGAGGATAGCGAAAACACCACTGCTAAAGAAACTAGGAGTGGAAAGGACATCCAAGGTATAACATGGGAAACAGAAACATCGAATTATAGAAGTCGTGAGACATTTAGACAACATAGGTCAGAAAGTCTCCTGAATGGACCTGAAGAACACTTATCAATTAAACAGGCCAAGCAGGAATGTCAATCAACAGTAAAAGGAGGGGAGTTTTATAATTTTTATCAATACAATAATTGTTTAATGCCAACAATACAAGATTGGGCACTCGCGGATTATGCTGGTAGGCTTTGGTCCACGTCAAAGCATGATTTATATCTCTCTGCAGGTACCCAAATTTGTCACTGGAATGCATTAACATCCACGAACACTGAAATCTTGGATTTGGAAGGGCACGTTGCTCCGTCTGAGGAACATCCTGGAGCCTTCATGGAAGGATTGACTGAGACACGGCGGATTGATGCAATGGCTGTAGGCCATAAGTTGTTGATTGTTGGAGGCAATGAAGGACAACTGATTTGCAAGCACTTGGATCGTCCCGGGATCAGTTTTTGTTTCAGATCAGATGATCCAAGAATGATAAATGCTATTGAGATTTATAAGTGTCCCACTCTCACCAGTGAAGTTATTCATTTCATGGTTTCATATGAAGAGGGTAGTGTCAGAATCTTTGATGTAGAGACATTTCAGTTTTCACATTTTGAATTTCCATGGCCCGTGAGGCATGCTTCATCAAGCCCAGATGGACGACAACTCGTAGTTGTTGGAGACAAGCCGGAAGGGACACTAGTGGATTCTCAAACAGGATTGATCATCCAATATTTTGGTGGACATTTTGGTTACTCATGTTCGTCTGCATGGCATCCTGATGGACACAGATTTGCTACTGGAAACAGAGATAGAACATGTCGCATTTGGGATGCTCGAAATTTGTCAAAATCTGTTTTTGCTCTTGGGGGCAACGTCAGCACTATTTCTTCAATAAGTTTCACATCTGATGGACGCTTTATGGCAATGAGTGAAAAGCAAGATTTTGTGCATGTGTATGATGTAGGGGCTGACTTCAAGAGAGAGCAGGAGATCAATTTTTTTGGATATGTCTCTGGATTATGTTTTAGTCCTGACACAGAATATCTTTTTATCAGTGTCTCCATGTTTACTTTTCCAACCCTTTTATTGTACAACCGACGCAGACACGAGTACTACTACCTAGATTCTATGCCTTGACACGAATTCTGAATTCCAAACCCACACTATCTCTATTGCCATTCATAGGTTGTTTGAGTAATTAAGATGATATTGTGTTCAAATGCTGGAAAAACTAGTCTTGAGTTTAAAAGAGTACACTGGCTAGGAATTTAGCATGAAAGTAAATAATAGATTAATTTAAGCTAAAGATTTGAATTTCAAATTATTTTTAAAATATCACTATGTTATTAAATGCAAAAATTCACCAATGGTGAATCAAATTTAT

>Glyma15g14840.6   sequence type=transcript   gene model=Glyma15g14840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGTGAATAAGAAGGTGGCTGGCCTAGTTCTCTTGTAAAGATTAGTGATTCGTCTATAATTCGTCGTCTTGTGTAGAAATGTCAGAGGCCGTTAGACTATGCTCAAAGGTCTCATCTTTCTCTCATTCCCACGCCAATGATGCCCCTTCCTTCTCCAATAATAATAAATAGGCTACCTAAGGAACATATTGGTGATGCGGACACATGCACTGCTTTTGAGTGTTTTCTTTGGCTCTACTGCATTTTGAGCATCGGGAGAAAATCTCTCAAAGGACCACGAGCCTGAAATGGATAACGATTATGAAACTATTTCATTCCTGATAGAGGATAGCGAAAACACCACTGCTAAAGAAACTAGGAGTGGAAAGGACATCCAAGGTATAACATGGGAAACAGAAACATCGAATTATAGAAGTCGTGAGACATTTAGACAACATAGGTCAGAAAGTCTCCTGAATGGACCTGAAGAACACTTATCAATTAAACAGGCCAAGCAGGAATGTCAATCAACAGTAAAAGGAGGGGAGTTTTATAATTTTTATCAATACAATAATTGTTTAATGCCAACAATACAAGATTGGGCACTCGCGGATTATGCTGGTAGGCTTTGGTCCACGTCAAAGCATGATTTATATCTCTCTGCAGGTACCCAAATTTGTCACTGGAATGCATTAACATCCACGAACACTGAAATCTTGGATTTGGAAGGGCACGTTGCTCCGTCTGAGGAACATCCTGGAGCCTTCATGGAAGGATTGACTGAGACACGGCGGATTGATGCAATGGCTGTAGGCCATAAGTTGTTGATTGTTGGAGGCAATGAAGGACAACTGATTTGCAAGCACTTGGATCGTCCCGGGATCAGTTTTTGTTTCAGATCAGATGATCCAAGAATGATAAATGCTATTGAGATTTATAAGTGTCCCACTCTCACCAGTGAAGTTATTCATTTCATGGTTTCATATGAAGAGGGTAGTGTCAGAATCTTTGATGTAGAGACATTTCAGTTTTCACATTTTGAATTTCCATGGCCCGTGAGGCATGCTTCATCAAGCCCAGATGGACGACAACTCGTAGTTGTTGGAGACAAGCCGGAAGGGACACTAGTGGATTCTCAAACAGGATTGATCATCCAATATTTTGGTGGACATTTTGGTTACTCATGTTCGTCTGCATGGCATCCTGATGGACACAGATTTGCTACTGGAAACAGAGATAGAACATGTCGCATTTGGGATGCTCGAAATTTGTCAAAATCTGTTTTTGCTCTTGGGGGCAACGTCAGCACTATTTCTTCAATAAGTTTCACATCTGATGGACGCTTTATGGCAATGAGTGAAAAGCAAGATTTTGTGCATGTGTATGATGTAGGGGCTGACTTCAAGAGAGAGCAGGAGATCAATTTTTTTGGATATGTCTCTGGATTATGTTTTAGTCCTGACACAGAATATCTTTTTATCAGTGTCTCCATGTTTACTTTTCCAACCCTTTTATTGTACAACCGACGCAGACACGAGTACTACTACCTAGATTCTATGCCTTGACACGAATTCTGAATTCCAAACCCACACTATCTCTATTGCCATTCATAGGTTGTTTGAGTAATTAAGATGATATTGTGTTCAAATGCTGGAAAAACTAGTCTTGAGTTTAAAAGAGTACACTGGCTAGGAATTTAGCATGAAAGTAAATAATAGATTAATTTAAGCTAAAGATTTGAATTTCAAATTATTTTTAAAATATCACTATGTTATTAAATGCAAAAATTCACCAATGGTGAATCAAATTTAT

Coding sequences of Glyma15g14840

Limit To All Plant Sequences

>Glyma15g14840.2   sequence type=CDS   gene model=Glyma15g14840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAACGATTATGAAACTATTTCATTCCTGATAGAGGATAGCGAAAACACCACTGCTAAAGAAACTAGGAGTGGAAAGGACATCCAAGGTATAACATGGGAAACAGAAACATCGAATTATAGAAGTCGTGAGACATTTAGACAACATAGGTCAGAAAGTCTCCTGAATGGACCTGAAGAACACTTATCAATTAAACAGGCCAAGCAGGAATGTCAATCAACAGTAAAAGGAGGGGAGTTTTATAATTTTTATCAATACAATAATTGTTTAATGCCAACAATACAAGATTGGGCACTCGCGGATTATGCTGGTAGGCTTTGGTCCACGTCAAAGCATGATTTATATCTCTCTGCAGGTACCCAAATTTGTCACTGGAATGCATTAACATCCACGAACACTGAAATCTTGGATTTGGAAGGGCACGTTGCTCCGTCTGAGGAACATCCTGGAGCCTTCATGGAAGGATTGACTGAGACACGGCGGATTGATGCAATGGCTGTAGGCCATAAGTTGTTGATTGTTGGAGGCAATGAAGGACAACTGATTTGCAAGCACTTGGATCGTCCCGGGATCAGTTTTTGTTTCAGATCAGATGATCCAAGAATGATAAATGCTATTGAGATTTATAAGTGTCCCACTCTCACCAGTGAAGTTATTCATTTCATGGTTTCATATGAAGAGGGTAGTGTCAGAATCTTTGATGTAGAGACATTTCAGTTTTCACATTTTGAATTTCCATGGCCCGTGAGGCATGCTTCATCAAGCCCAGATGGACGACAACTCGTAGTTGTTGGAGACAAGCCGGAAGGGACACTAGTGGATTCTCAAACAGGATTGATCATCCAATATTTTGGTGGACATTTTGGTTACTCATGTTCGTCTGCATGGCATCCTGATGGACACAGATTTGCTACTGGAAACAGAGATAGAACATGTCGCATTTGGGATGCTCGAAATTTGTCAAAATCTGTTTTTGCTCTTGGGGGCAACGTCAGCACTATTTCTTCAATAAGTTTCACATCTGATGGACGCTTTATGGCAATGAGTGAAAAGCAAGATTTTGTGCATGTGTATGATGTAGGGGCTGACTTCAAGAGAGAGCAGGAGATCAATTTTTTTGGATATGTCTCTGGATTATGTTTTAGTCCTGACACAGAATATCTTTTTATCAGTGTCTCCATGTTTACTTTTCCAACCCTTTTATTGTACAACCGACGCAGACACGAGTACTACTACCTAGATTCTATGCCTTGA

>Glyma15g14840.5   sequence type=CDS   gene model=Glyma15g14840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAACGATTATGAAACTATTTCATTCCTGATAGAGGATAGCGAAAACACCACTGCTAAAGAAACTAGGAGTGGAAAGGACATCCAAGGTATAACATGGGAAACAGAAACATCGAATTATAGAAGTCGTGAGACATTTAGACAACATAGGTCAGAAAGTCTCCTGAATGGACCTGAAGAACACTTATCAATTAAACAGGCCAAGCAGGAATGTCAATCAACAGTAAAAGGAGGGGAGTTTTATAATTTTTATCAATACAATAATTGTTTAATGCCAACAATACAAGATTGGGCACTCGCGGATTATGCTGGTAGGCTTTGGTCCACGTCAAAGCATGATTTATATCTCTCTGCAGGTACCCAAATTTGTCACTGGAATGCATTAACATCCACGAACACTGAAATCTTGGATTTGGAAGGGCACGTTGCTCCGTCTGAGGAACATCCTGGAGCCTTCATGGAAGGATTGACTGAGACACGGCGGATTGATGCAATGGCTGTAGGCCATAAGTTGTTGATTGTTGGAGGCAATGAAGGACAACTGATTTGCAAGCACTTGGATCGTCCCGGGATCAGTTTTTGTTTCAGATCAGATGATCCAAGAATGATAAATGCTATTGAGATTTATAAGTGTCCCACTCTCACCAGTGAAGTTATTCATTTCATGGTTTCATATGAAGAGGGTAGTGTCAGAATCTTTGATGTAGAGACATTTCAGTTTTCACATTTTGAATTTCCATGGCCCGTGAGGCATGCTTCATCAAGCCCAGATGGACGACAACTCGTAGTTGTTGGAGACAAGCCGGAAGGGACACTAGTGGATTCTCAAACAGGATTGATCATCCAATATTTTGGTGGACATTTTGGTTACTCATGTTCGTCTGCATGGCATCCTGATGGACACAGATTTGCTACTGGAAACAGAGATAGAACATGTCGCATTTGGGATGCTCGAAATTTGTCAAAATCTGTTTTTGCTCTTGGGGGCAACGTCAGCACTATTTCTTCAATAAGTTTCACATCTGATGGACGCTTTATGGCAATGAGTGAAAAGCAAGATTTTGTGCATGTGTATGATGTAGGGGCTGACTTCAAGAGAGAGCAGGAGATCAATTTTTTTGGATATGTCTCTGGATTATGTTTTAGTCCTGACACAGAATATCTTTTTATCAGTGTCTCCATGTTTACTTTTCCAACCCTTTTATTGTACAACCGACGCAGACACGAGTACTACTACCTAGATTCTATGCCTTGA

>Glyma15g14840.6   sequence type=CDS   gene model=Glyma15g14840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAACGATTATGAAACTATTTCATTCCTGATAGAGGATAGCGAAAACACCACTGCTAAAGAAACTAGGAGTGGAAAGGACATCCAAGGTATAACATGGGAAACAGAAACATCGAATTATAGAAGTCGTGAGACATTTAGACAACATAGGTCAGAAAGTCTCCTGAATGGACCTGAAGAACACTTATCAATTAAACAGGCCAAGCAGGAATGTCAATCAACAGTAAAAGGAGGGGAGTTTTATAATTTTTATCAATACAATAATTGTTTAATGCCAACAATACAAGATTGGGCACTCGCGGATTATGCTGGTAGGCTTTGGTCCACGTCAAAGCATGATTTATATCTCTCTGCAGGTACCCAAATTTGTCACTGGAATGCATTAACATCCACGAACACTGAAATCTTGGATTTGGAAGGGCACGTTGCTCCGTCTGAGGAACATCCTGGAGCCTTCATGGAAGGATTGACTGAGACACGGCGGATTGATGCAATGGCTGTAGGCCATAAGTTGTTGATTGTTGGAGGCAATGAAGGACAACTGATTTGCAAGCACTTGGATCGTCCCGGGATCAGTTTTTGTTTCAGATCAGATGATCCAAGAATGATAAATGCTATTGAGATTTATAAGTGTCCCACTCTCACCAGTGAAGTTATTCATTTCATGGTTTCATATGAAGAGGGTAGTGTCAGAATCTTTGATGTAGAGACATTTCAGTTTTCACATTTTGAATTTCCATGGCCCGTGAGGCATGCTTCATCAAGCCCAGATGGACGACAACTCGTAGTTGTTGGAGACAAGCCGGAAGGGACACTAGTGGATTCTCAAACAGGATTGATCATCCAATATTTTGGTGGACATTTTGGTTACTCATGTTCGTCTGCATGGCATCCTGATGGACACAGATTTGCTACTGGAAACAGAGATAGAACATGTCGCATTTGGGATGCTCGAAATTTGTCAAAATCTGTTTTTGCTCTTGGGGGCAACGTCAGCACTATTTCTTCAATAAGTTTCACATCTGATGGACGCTTTATGGCAATGAGTGAAAAGCAAGATTTTGTGCATGTGTATGATGTAGGGGCTGACTTCAAGAGAGAGCAGGAGATCAATTTTTTTGGATATGTCTCTGGATTATGTTTTAGTCCTGACACAGAATATCTTTTTATCAGTGTCTCCATGTTTACTTTTCCAACCCTTTTATTGTACAACCGACGCAGACACGAGTACTACTACCTAGATTCTATGCCTTGA

Predicted protein sequences of Glyma15g14840

Limit To All Plant Sequences

>Glyma15g14840.2   sequence type=predicted peptide   gene model=Glyma15g14840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNDYETISFLIEDSENTTAKETRSGKDIQGITWETETSNYRSRETFRQHRSESLLNGPEEHLSIKQAKQECQSTVKGGEFYNFYQYNNCLMPTIQDWALADYAGRLWSTSKHDLYLSAGTQICHWNALTSTNTEILDLEGHVAPSEEHPGAFMEGLTETRRIDAMAVGHKLLIVGGNEGQLICKHLDRPGISFCFRSDDPRMINAIEIYKCPTLTSEVIHFMVSYEEGSVRIFDVETFQFSHFEFPWPVRHASSSPDGRQLVVVGDKPEGTLVDSQTGLIIQYFGGHFGYSCSSAWHPDGHRFATGNRDRTCRIWDARNLSKSVFALGGNVSTISSISFTSDGRFMAMSEKQDFVHVYDVGADFKREQEINFFGYVSGLCFSPDTEYLFISVSMFTFPTLLLYNRRRHEYYYLDSMP*

>Glyma15g14840.5   sequence type=predicted peptide   gene model=Glyma15g14840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNDYETISFLIEDSENTTAKETRSGKDIQGITWETETSNYRSRETFRQHRSESLLNGPEEHLSIKQAKQECQSTVKGGEFYNFYQYNNCLMPTIQDWALADYAGRLWSTSKHDLYLSAGTQICHWNALTSTNTEILDLEGHVAPSEEHPGAFMEGLTETRRIDAMAVGHKLLIVGGNEGQLICKHLDRPGISFCFRSDDPRMINAIEIYKCPTLTSEVIHFMVSYEEGSVRIFDVETFQFSHFEFPWPVRHASSSPDGRQLVVVGDKPEGTLVDSQTGLIIQYFGGHFGYSCSSAWHPDGHRFATGNRDRTCRIWDARNLSKSVFALGGNVSTISSISFTSDGRFMAMSEKQDFVHVYDVGADFKREQEINFFGYVSGLCFSPDTEYLFISVSMFTFPTLLLYNRRRHEYYYLDSMP*

>Glyma15g14840.6   sequence type=predicted peptide   gene model=Glyma15g14840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNDYETISFLIEDSENTTAKETRSGKDIQGITWETETSNYRSRETFRQHRSESLLNGPEEHLSIKQAKQECQSTVKGGEFYNFYQYNNCLMPTIQDWALADYAGRLWSTSKHDLYLSAGTQICHWNALTSTNTEILDLEGHVAPSEEHPGAFMEGLTETRRIDAMAVGHKLLIVGGNEGQLICKHLDRPGISFCFRSDDPRMINAIEIYKCPTLTSEVIHFMVSYEEGSVRIFDVETFQFSHFEFPWPVRHASSSPDGRQLVVVGDKPEGTLVDSQTGLIIQYFGGHFGYSCSSAWHPDGHRFATGNRDRTCRIWDARNLSKSVFALGGNVSTISSISFTSDGRFMAMSEKQDFVHVYDVGADFKREQEINFFGYVSGLCFSPDTEYLFISVSMFTFPTLLLYNRRRHEYYYLDSMP*

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