SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G47980 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62730.1); Has 169 Blast hits to 169 proteins in 41 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; O | SoyBase | E_val: 3.00E-138 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1MGC1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MGC1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q01L47 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: H0502B11.4 protein n=1 Tax=Oryza sativa RepID=Q01L47_ORYSA | SoyBase | E_val: 6.00E-111 | ISS |
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Glyma15g14720 not represented in the dataset |
Glyma15g14720 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g03780 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g138000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g14720.2 sequence type=CDS gene model=Glyma15g14720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCATCATCACTTTGGAAAAAAGAACCTAAAACAAAACATGGCACCTCAAATTTCTAGAGGCAGAGTCCCTATTGTTGTTTTGCTAGCCTCTCTAGTCCTCCCCCTCCTTTTTCAAGAATATTCTTCTTCTTCTGTGTTCATTGCAAGTGCATCAGCTTCAGAATCAGATGTTGATCTGTTAGAATTTCCCTTAAATTTAGAATACTTGGAGGCTGAGTTTTTCTTATTTGGTTCCTTGGGTCATGGATTGGATGTGGTTGCTCCAAATTTAAGTGAGGGAGGACCCCCTCCCATTGGTGCCAGATTGGCCAGACTTGAGAACCTCATCAGGGATATCATCTTGCAGTTTGGTTTGCAGGAAGTTGGACACTTGAGGGCCATAAAGAGCACAGTGAGAGGGTTCCCAAGGCCGTTACTTGATCTAAGCACAGCATCTTTTGCAAAAGTAATGAATAGTGCATTTGGGAGACCTCTTGTTCCTCCCTTTGACCCCTATGCTAATTCGATCAACTATCTGTTAGCATCTTATGTGATTCCCTATGTTGGTCTCACTGGTTATGTTGGTGCCAATCCACTGCTGCAAAATGCTACTTCCAAGAGGCTTGTTGCAGGACTTCTAGGAGTAGAGTCCGGGCAAGATGCGGTTATTCGAACATTGTTGTATGAACGCCAAGCATCATTGGTGCAACCATACAAAGTGACTGTGGCAGAGTTTACAGATCGCATTTCAATGCTTAGGAACAAGCTAGGAAATGCAGGTGTGAAAGACGAGGGTCTTGTGGTGCCTAGAGTGCAAGGTGCTGAGGGTAGTGTCACAGACAACATTCTCGCTGGTGACAAAGATTCACTATCATATCCTAGAACTCCAGAGGAAATATTGAGGATAATATATGGAGGAGGTGATGAACATGTTCCTGGTGGTTTCTACCCTAACGGAGCATGTGGTCGCATAGCTAAATCTTACTTGAAGTACACTACTTAA
>Glyma15g14720.2 sequence type=predicted peptide gene model=Glyma15g14720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHHHFGKKNLKQNMAPQISRGRVPIVVLLASLVLPLLFQEYSSSSVFIASASASESDVDLLEFPLNLEYLEAEFFLFGSLGHGLDVVAPNLSEGGPPPIGARLARLENLIRDIILQFGLQEVGHLRAIKSTVRGFPRPLLDLSTASFAKVMNSAFGRPLVPPFDPYANSINYLLASYVIPYVGLTGYVGANPLLQNATSKRLVAGLLGVESGQDAVIRTLLYERQASLVQPYKVTVAEFTDRISMLRNKLGNAGVKDEGLVVPRVQGAEGSVTDNILAGDKDSLSYPRTPEEILRIIYGGGDEHVPGGFYPNGACGRIAKSYLKYTT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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