SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G17205 | AT | Annotation by Michelle Graham. TAIR10: ubiquitin protein ligase 6 | chr3:5873528-5881132 FORWARD LENGTH=1029 | SoyBase | E_val: 0 | ISS |
| GO:0006464 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular protein modification process | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0000151 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0016881 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity | SoyBase | N/A | ISS |
| KOG0942 | KOG | E3 ubiquitin protein ligase | JGI | ISS | |
| PTHR11254 | Panther | UBIQUITIN-PROTEIN LIGASE | JGI | ISS | |
| PTHR11254:SF106 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00632 | PFAM | HECT-domain (ubiquitin-transferase) | JGI | ISS | |
| UniRef100_B9RZW1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9RZW1_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233BB7A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BB7A related cluster n=1 Tax=unknown RepID=UPI000233BB7A | SoyBase | E_val: 0 | ISS |
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Glyma15g14591 not represented in the dataset |
Glyma15g14591 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g03681 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g137000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g14591.1 sequence type=CDS gene model=Glyma15g14591 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCTTCAGCGGCGATTCCTCCACTCGTAAGCGCGTTGATTTAGGTGGCCGCAGCTCGAAGGAACGGGACAGGAATAATCTCCTGGAGCAGACGCGGTTGGAGCGGAACCGGCGCATGTGGTTGCGCCAGCAGAACTCTGCTGCCCTCAGGATTCAGAAATGCTTCAGAGGGAGAAAAGTTGTCAGAACAGAACAATCTAAACTACGAGAGAAATTCCTTAGTATCTATGGCAAAAACTGCCAGAATTTAGACAGGAATGCTTATGCTCCAGGTTCTGATTTCCTCCGTCAGTTCCTCTATTTCTTTAATGCAGAAAATATTGATGATTTTTTAATTCTTGTGCAAATTTGCCGAATGCTTCAACGGTTTGTTCAAGACAGTGGGGATGTTGTGAGACTTTTTGCTGGTGTGGATTACTCATCCACGTGTGCTTTGGTGAACTACCGAGTGAAGCAATTTGTATATACTTGTATTTGTGCTGTACATCAGAATAGGAATAAGTTGAAGGATCAGCTTTTATTGACTCCAAAGGATTTTAATGCATCAGCTATTCCTTTATTGGAAATCTTAGTATTGTTGATAGATCCCAAACTGCCATGGAGCTGTAAGACAGTAGTATCTCTATCTCAAAACAATGCATTTGGTCTACTTAGAGAGATTATTCTTACAGGAAAGGATAATGCTGAAAATTGTATTTACAGTGAAAAGGGATCATCATTGGAGTGTGTGCTTACTGTTGTAATGTGTCACATCGGTCAGAAGCCATGTATCTGTTCACATACTGATCCACTATATAGCTTCTCATCACAGATTCTTACAATTCCTTTCTTGTGGCATGTTTTTCCAAACTTAAAGCAGGTATTTGCAAAACAGGGCCTGAGCCAACATTACGTTCATCAGATGGCAACATGGGTGCCAAATCTGATTAGTTCTCTACCTAAGGATATATCAGATGAATTTCCTACCTATGCCTGTCTTCTTGGAAATATATTAGAAACTGGTGGATTTGCTTTGTCTCGACCTGACTGTTCCTTTGATATGGCCATAGACCTTGCTGCTGTTATTACATTTTTGCTGGAATCACACCCATCTCTAACAAGATCTGATGGTAGAGAGAGTTCTTCTATTGCTGAGGATGAAATGACTGGCGAAGATGAAGTCATGGAAGTAGCTTTGGATAGGAAATTGAATCAACAAATTTGCAATGCCATAGATACTCGCTTCCTTTTGCAACTGACAAATATATTATTTGGAGATTTTTCATCTGCCAATAGTTCAGATCATGAGCCAGATGACAAGGAGGTTGCAGCTGTTGGTGCAGTTTGTGGGTTTTTATATGTTATCTTCAATACTTTGCCACTCGAAAAGATTATGACTGTGCTTGCCTACCGAACTGAACTTGTTCCTATACTTTGGAATTTTATGAAACGGTGCCATGAGAATGAAAAATGGTCATCTTTGTCTGAACGGTTATCATACCTCTCAGGTGATGCACCTGGTTGGCTGTTGCCTCTTGCTGTATTCTGTCCTGTCTACAAGCACATGCTCATGATAGTTGATAATGAAGAATATTATGAGCAGGAGAAACCGCTATCACTGAAGGATATTAGAAGCCTTATCATTCTGTTAAGGCAGGCTCTGTGGCAGCTAATGTGGGTGAATCATACCACGTCTGCTAATTCAGTAAAATCTGTTCCAGTTAGCCCAGCTATTAAAAAGCAGTCGGAAGCGATTCAACAGAGGGTTAGCATTGTAGTGTCAGAGCTTCTGTCCCAGCTGCAAGATTGGAACAACAGACGACAATTTACATCCCCTACTGACTTCCATGCTGATGGGGTGAATGACTTCTTTATCTCACAGGCTGTTATGGAAAATACACAAGCAAATGAAATTTTGAAGCAGGCTGCTTTCTTGATACCATTTACTAGCAGGGTTAAAATTTTGACTTCTCAACTAGCTGCTGCAAGGCAAAGACATGGGTCTCAGGCTGTTTATACTAGAAACCGGTTCAGAATACGGCGGAATCATATTTTGGAAGATGCTTATAATCAAATGAGTCAGTTGTCAGAAGATGACCTTCGAGGATTGATTCGTGTGGCTTTTGTCAATGAATTGGGAGTTGAAGAGGCTGGAATAGATGGAGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGATTATTTAAGGAAACAGCAGATTACCTGCTTTATCCCAATCCTGGATCAGGAATGATACATGAACAACATCTCCAATTTTTCCATTTTCTTGGTACTCTTCTTGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATTTACCTTTTGCTACATTCTTTTTGAGCAAATTGAAACAAAAGCACAACTATTTGAATGACTTGCCTTCCCTGGACCCAGAATTATATCGTCATCTTATCTTTCTAAAGCATTATGAGCGTGACATTTCGGAGTTGGAACTATATTTTGTTATAGTAAACAACGAATATGGAGAGCAAACAGAAGAGGAGCTGCTTCCAGGGGGAAAGAACCTTCGTGTCACCAATGAGAATGTCATTACTTTTATCCATCTTGTAGCCAATCACCGCTTGAATTTTCAGATACGTCAACAAAGTTCTCATTTCCTGAGAGGATTTCAGCAACTTATTCAGAAGGATTGGATTGATATGTTTAATGAGCATGAACTTCAGCTTCTGATATCAGGTTCACTTGACAGCTTGGATGTTGATGATTTGCGGCAGCATACAAACTATGCAGGAGGTTATCATAGTGACCATCATGTTATTGAGATGTTCTGGGAAGTTCTCAAAGGCTTTTCATTAGAAAACAAGAAGAAATTTTTGAAGTTTGTGACAGGTTGCTCGCGGGGACCATTGCTTGGATTCCAATATCTTGAACCTTTGTTTTGCATCCAAAGGGCTGGTAGTAATGATCCAGACGAAGCTCTTGATCGATTACCTACATCAGCTACTTGCATGAACTTACTAAAGCTTCCACCTTATAAAAGTAAAGAGCAGCTGGAAACCAAATTACTCTATGCCATAAACGCTGATGCTGGCTTTGATTTGAGTTAA
>Glyma15g14591.1 sequence type=predicted peptide gene model=Glyma15g14591 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFFSGDSSTRKRVDLGGRSSKERDRNNLLEQTRLERNRRMWLRQQNSAALRIQKCFRGRKVVRTEQSKLREKFLSIYGKNCQNLDRNAYAPGSDFLRQFLYFFNAENIDDFLILVQICRMLQRFVQDSGDVVRLFAGVDYSSTCALVNYRVKQFVYTCICAVHQNRNKLKDQLLLTPKDFNASAIPLLEILVLLIDPKLPWSCKTVVSLSQNNAFGLLREIILTGKDNAENCIYSEKGSSLECVLTVVMCHIGQKPCICSHTDPLYSFSSQILTIPFLWHVFPNLKQVFAKQGLSQHYVHQMATWVPNLISSLPKDISDEFPTYACLLGNILETGGFALSRPDCSFDMAIDLAAVITFLLESHPSLTRSDGRESSSIAEDEMTGEDEVMEVALDRKLNQQICNAIDTRFLLQLTNILFGDFSSANSSDHEPDDKEVAAVGAVCGFLYVIFNTLPLEKIMTVLAYRTELVPILWNFMKRCHENEKWSSLSERLSYLSGDAPGWLLPLAVFCPVYKHMLMIVDNEEYYEQEKPLSLKDIRSLIILLRQALWQLMWVNHTTSANSVKSVPVSPAIKKQSEAIQQRVSIVVSELLSQLQDWNNRRQFTSPTDFHADGVNDFFISQAVMENTQANEILKQAAFLIPFTSRVKILTSQLAAARQRHGSQAVYTRNRFRIRRNHILEDAYNQMSQLSEDDLRGLIRVAFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADYLLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDLPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHYERDISELELYFVIVNNEYGEQTEEELLPGGKNLRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDVDDLRQHTNYAGGYHSDHHVIEMFWEVLKGFSLENKKKFLKFVTGCSRGPLLGFQYLEPLFCIQRAGSNDPDEALDRLPTSATCMNLLKLPPYKSKEQLETKLLYAINADAGFDLS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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