SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G62270 | AT | Annotation by Michelle Graham. TAIR10: HCO3- transporter family | chr3:23042528-23045633 REVERSE LENGTH=703 | SoyBase | E_val: 0 | ISS |
| GO:0006820 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anion transport | SoyBase | N/A | ISS |
| GO:0006826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron ion transport | SoyBase | N/A | ISS |
| GO:0010106 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0052541 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall cellulose metabolic process | SoyBase | N/A | ISS |
| GO:0052546 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005452 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: inorganic anion exchanger activity | SoyBase | N/A | ISS |
| GO:0015301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: anion:anion antiporter activity | SoyBase | N/A | ISS |
| PTHR11453 | Panther | ANION EXCHANGE PROTEIN | JGI | ISS | |
| PTHR11453:SF6 | Panther | ANION EXCHANGE PROTEIN-RELATED | JGI | ISS | |
| PF00955 | PFAM | HCO3- transporter family | JGI | ISS | |
| UniRef100_B9HIJ0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Anion exchanger family protein n=1 Tax=Populus trichocarpa RepID=B9HIJ0_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233815A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233815A related cluster n=1 Tax=unknown RepID=UPI000233815A | SoyBase | E_val: 0 | ISS |
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Glyma15g14521 not represented in the dataset |
Glyma15g14521 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g03600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g136500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g14521.1 sequence type=CDS gene model=Glyma15g14521 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGAGACATTTGTTCCGTTTTGTGAAATTAAAAATGATCTTCAAGGGAGATTGATGTGTTACAAGCAAGACTGGATTGGTGGTCTCACGGCAGGCTTCAGGATGTTAGCCCCTACCACAGACACGGGTACTTTACATGTTACTCATATCCCATACTTGGGTTTTATCCATGTATGGAATCTTTTTTTTTATGATAAGATAGATGGAGTACTCACTGCAGTGCAAACATTAGCATCTACTGCACTGTTTGGAATTATACACTCTATTATAGGAGGCCAGCCTTTGCTGATTCTTGGAGTAGCAGAACCAACTGTAATTATGTATACATTCATGTTTAACTTTGCTACAAGTAGACCAGAATTGGGTTCGAAACTCTTTCTAGCATTGACTGGATGGGTATGCATGTGGACTGCCATCTTGTTGTTCCTACTGGCTATCTTAGGAGCTTGTTCCATCATCAACAGGTTCACTCGCCTAGCAGGGGAACTGTTTGGCCTTCTTATTGCAATGCTTTTCATGCAAGAGGCTATTAGAGGACTCATTCATGAGTTTCACATACCTGAGAGGGCAAACCTAACATCACCTGAGTTTCAATCTTCGTGGAGATTTGGAAATGGCATGTTTTCTTTGGTTCTGTACTTTGGCCTCCTGCATACAGCATTGAGAAGCCGAAAAGCAAGGTCTCGATATGGATTCTTTGTTGCAAGAAGATGTTTACGAGGCTTCATAGCAGATTATGGTGTCCCATTGATGGTTTTGTTGTGGACTGCCATTTCTTATATTTCAGCTGGAAGTATTCCAAAAGGAATCCCTAGGCGTCTCTTCAGTCCAAATCCATGGTCATCTGGTGCATTTGAAAACTGGACTGTCATAAAGGACATGCTGAATGTGCCAGTTCTCTATATTATTGGAGCCTTTATTCCAGCAACAATGATTGCTGTGCTTTATTATTTTGACCATAGTGTGGCATCTCAGCTTGCTCAGCAGAAAGAGTTCAACTTAAGAAAGCCCCCTTCCTTCCATTATGATTTGCTTCTATTGGGATTTATGGTTATAATATGTGGTCTAATTGGAATTCCTCCGTCAAATGGTGTCATTCCACAATCTCCAGTGCATACCAAAAGTTTAGCTACATTGAAGCACCAGTTACTTAGAAACCGGCTTGTTGCAACAGCACGAAGTTCTATGAAAAAGCTAGAAAGCTTGGGACAAGTATATGGAAGTATGCAAGATTCTTACTGGCAGATGCAAACCCCTCTAGTTCACCAGGAACCTTCCGCGAAGGGACTTAAAGAGTTGAAAGAGTCAACTATTCATTTGGCGTCAAGCATGGGGAGTATAAATGCCCCAGTTGATGAGTCAGTATTTGACATTGTGAAGGAAATTGATGACTTATTGCCTGTTGAGGTCAAAGAAGAACGAGGATGTGTAGCAGCAATGCCTTTCCTGAAAATTATTCCAACTTCTGTACTTTGGGGCTATTTTGCTTTGATGGCCATTGAAAACTTACCTGGCAACCAGTTTCGGGAATGGATTTTATTAATTTTCATTGCTCCAAGTCGAAGATACAAAGTCTTGGAGGAGTGCCATGCAACTTATGTGGAAACCGTACCATTCAAGACAATTGCAGTATTCACAGCCTTCCAGACTGCTTACTTGCTTGTTTGTTTCGGTATCACTTGGGTGCCAATAGCTGGGGTTCTATTCCCATTGATGATCATGCTTCTGGTTCCTGTAAGGCAATACATTCTGCCCAAGTTTTTCAAAGGAGCACACCTTCAAGATTTAGATGCTGCAGAATATGAAGTACCTGCTTTACCATTCAACTTAGTGGCTGAAAGGGACTTGAGCAGGACAGCTTCCTTTGCAGATTATGGAGAGGTTTTAGATGGAATAGTTACTAGAAGCTGGGGCGAGGTTAAACGTGTTTGCAGTCCAAAGGTGATGAAATCCACTCCAAACATATCCCAAGAGTTAACAAGTGCAAGGTTCCCAGATAAAATATACAGCCCTCGGATGAGCCATCTCAGAGGAAACCAAAGCCCTCGAGGTGTTGGCAGAGGACCATTTAGCCCTGCAGAAGTTAGGCCATCCAATTTGAGGAAAGGTGGTTGA
>Glyma15g14521.1 sequence type=predicted peptide gene model=Glyma15g14521 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEETFVPFCEIKNDLQGRLMCYKQDWIGGLTAGFRMLAPTTDTGTLHVTHIPYLGFIHVWNLFFYDKIDGVLTAVQTLASTALFGIIHSIIGGQPLLILGVAEPTVIMYTFMFNFATSRPELGSKLFLALTGWVCMWTAILLFLLAILGACSIINRFTRLAGELFGLLIAMLFMQEAIRGLIHEFHIPERANLTSPEFQSSWRFGNGMFSLVLYFGLLHTALRSRKARSRYGFFVARRCLRGFIADYGVPLMVLLWTAISYISAGSIPKGIPRRLFSPNPWSSGAFENWTVIKDMLNVPVLYIIGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPPSFHYDLLLLGFMVIICGLIGIPPSNGVIPQSPVHTKSLATLKHQLLRNRLVATARSSMKKLESLGQVYGSMQDSYWQMQTPLVHQEPSAKGLKELKESTIHLASSMGSINAPVDESVFDIVKEIDDLLPVEVKEERGCVAAMPFLKIIPTSVLWGYFALMAIENLPGNQFREWILLIFIAPSRRYKVLEECHATYVETVPFKTIAVFTAFQTAYLLVCFGITWVPIAGVLFPLMIMLLVPVRQYILPKFFKGAHLQDLDAAEYEVPALPFNLVAERDLSRTASFADYGEVLDGIVTRSWGEVKRVCSPKVMKSTPNISQELTSARFPDKIYSPRMSHLRGNQSPRGVGRGPFSPAEVRPSNLRKGG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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