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Report for Sequence Feature Glyma15g14446

Feature Type:gene_model
Chromosome:Gm15
Start:10921140
stop:10924545
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g14446
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G30630AT Annotation by Michelle Graham. TAIR10: Coatomer epsilon subunit | chr1:10858546-10860173 REVERSE LENGTH=292 SoyBaseE_val: 6.00E-174ISS
GO:0006890GO-bp Annotation by Michelle Graham. GO Biological Process: retrograde vesicle-mediated transport, Golgi to ER SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0030126GO-cc Annotation by Michelle Graham. GO Cellular Compartment: COPI vesicle coat SoyBaseN/AISS
GO:0005198GO-mf Annotation by Michelle Graham. GO Molecular Function: structural molecule activity SoyBaseN/AISS
GO:0008565GO-mf Annotation by Michelle Graham. GO Molecular Function: protein transporter activity SoyBaseN/AISS
KOG3081 KOG Vesicle coat complex COPI, epsilon subunit JGI ISS
PTHR10805Panther COATOMER EPSILON SUBUNIT JGI ISS
PF04733PFAM Coatomer epsilon subunit JGI ISS
UniRef100_I1MGA1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MGA1_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q5QQ34UniRef Annotation by Michelle Graham. Most informative UniRef hit: Coatomer epsilon subunit n=1 Tax=Medicago truncatula RepID=Q5QQ34_MEDTR SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g14446
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g14446 not represented in the dataset
Glyma15g14446 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g14446
ParalogEvidenceComments
Glyma09g03500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g14446 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g136100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g14446
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma15g14446
>Glyma15g14446.2   sequence type=transcript   gene model=Glyma15g14446   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGAATAATTACAACGCCAAACAATAAGACTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTTTCTGTATCTGAATCTGCGTGTGTTTGTGAATTGTTGTTGAGATCTGAATCAAAATCAGAAACGATAATGGCTACACCGGACCACCTCTTCAACCTCCGCAACAACTTCTACCTCGGCGCTTACCAAGCCGCCATCAACAGCAGCGACGTTGCCAACCTCTCCCAAGAAGATACCCTCGAGCGCGACACCCTCGTCCACCGCTGCTACATCGCCCTCGGCCAGCTCCAGTTCGTCATCTCCGAGATCCACGACGATGCTCCCACACCACTCCAAGCCGTCAAACTCCTCGCCCTCTATTTCTCCTCTCCCGACACCAAGGATTCCGCCATCGCGAGTCTCAAGGAGTGGCTCGCCGATCCCGCTATTGGAAACAACGCCACGCTGAGGCTCGTCGCCGGTCTCGTCTTCCTCCACGAGAATGATTTCAATGAAGCCCTCAAACACACCAACGCCGGTGGAACCATGGAACTGCACGCGTTGAATATTCAGATCTTTATTAAGATGCATAGGTCGGATTACGCAGAGAGGCAGCTGCGGATCATGCAGCAGATTGATGAGGATCACACTCTCACTCAACTCGCCAATGCTTGGCTCAATTTGGCTGGTGGGTCGAAGATCCAGGAGGCGTATCTGATCTTCCAGGATTTGTCGGAGAGGTATCAGTCCACCAGCTTGCTCTTGAATGGCAAGGCTGTTTGCTGCATGCACATGGGCAACTTCGACGAAGCTGAGACCCTTTTGGTTGAAGCTCTTAACAAGGATGCCAGGGATCCAGAAACTCTAGCCAATCTAGTTGTATGCTGTCTTCATCTCGGCAAACCATCTAACAAATCATTCAGCCAGCTGAAACTTTCTCACCCAGAGCATGTATTGGTCAAACGGGTATCATCAGCTGAAGAAAGTTTTGATAGAGCGCTACAATCATTTTCCTCATGAGTGTCGATGATTGAATTTCTTTCAAGAGTTGAATGGTGTGAGGTCTTCCCGTGCAATTTTTACACCTTATCGTGGCTATTGTATTGGTTGCGTATCTTAGAACATAATCAACTGGGTAATGTGTCATAGTATTCAAATTTGTTATGTTTTTGGTTTACTTGAGTCTTGATGTTGTAAAAGCTACATCTGACATTAATTTTTAAACATGTTCATTTACATCGTCTATTTTACTAGAAAAGGGAGAAATACCAATAGGTATTAAGTAAACAAGATTACGATTGTGTGGATGGATAGGGAAAACTCTATTCAATTTTATCCATAATTTTACATTCTCGCATTTGTATTTTTCAATTAAAAATAGAATAGAATACCTGGAGTATCTAGCATTTGCAGCA

>Glyma15g14446.3   sequence type=transcript   gene model=Glyma15g14446   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCTCTCTCTCTCTCTCTCTCTCTCTCACTTTCTGTATCTGAATCTGCGTGTGTTTGTGAATTGTTGTTGAGATCTGAATCAAAATCAGAAACGATAATGGCTACACCGGACCACCTCTTCAACCTCCGCAACAACTTCTACCTCGGCGCTTACCAAGCCGCCATCAACAGCAGCGACGTTGCCAACCTCTCCCAAGAAGATACCCTCGAGCGCGACACCCTCGTCCACCGCTGCTACATCGCCCTCGGCCAGCTCCAGTTCGTCATCTCCGAGATCCACGACGATGCTCCCACACCACTCCAAGCCGTCAAACTCCTCGCCCTCTATTTCTCCTCTCCCGACACCAAGGATTCCGCCATCGCGAGTCTCAAGGAGTGGCTCGCCGATCCCGCTATTGGAAACAACGCCACGCTGAGGCTCGTCGCCGGTCTCGTCTTCCTCCACGAGAATGATTTCAATGAAGCCCTCAAACACACCAACGCCGGTGGAACCATGGAACTGCACGCGTTGAATATTCAGATCTTTATTAAGATGCATAGGTCGGATTACGCAGAGAGGCAGCTGCGGATCATGCAGCAGATTGATGAGGATCACACTCTCACTCAACTCGCCAATGCTTGGCTCAATTTGGCTGTGGTATTCAGTAATTAATTAATAATTGTTATACTTAGAAACTAGAAAAAGTGATGAAGAATTTTGGTGTGTGTTTG
Coding sequences of Glyma15g14446
>Glyma15g14446.1   sequence type=CDS   gene model=Glyma15g14446   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACACCGGACCACCTCTTCAACCTCCGCAACAACTTCTACCTCGGCGCTTACCAAGCCGCCATCAACAGCAGCGACGTTGCCAACCTCTCCCAAGAAGATACCCTCGAGCGCGACACCCTCGTCCACCGCTGCTACATCGCCCTCGGCCAGCTCCAGTTCGTCATCTCCGAGATCCACGACGATGCTCCCACACCACTCCAAGCCGTCAAACTCCTCGCCCTCTATTTCTCCTCTCCCGACACCAAGGATTCCGCCATCGCGAGTCTCAAGGAGTGGCTCGCCGATCCCGCTATTGGAAACAACGCCACGCTGAGGCTCGTCGCCGGTCTCGTCTTCCTCCACGAGAATGATTTCAATGAAGCCCTCAAACACACCAACGCCGGTGGAACCATGGAACTGCACGCGTTGAATATTCAGATCTTTATTAAGATGCATAGGTCGGATTACGCAGAGAGGCAGCTGCGGATCATGCAGCAGATTGATGAGGATCACACTCTCACTCAACTCGCCAATGCTTGGCTCAATTTGGCTGTGGGTGGGTCGAAGATCCAGGAGGCGTATCTGATCTTCCAGGATTTGTCGGAGAGGTATCAGTCCACCAGCTTGCTCTTGAATGGCAAGGCTGTTTGCTGCATGCACATGGGCAACTTCGACGAAGCTGAGACCCTTTTGGTTGAAGCTCTTAACAAGGATGCCAGGGATCCAGAAACTCTAGCCAATCTAGTTGTATGCTGTCTTCATCTCGGCAAACCATCTAACAAATCATTCAGCCAGCTGAAACTTTCTCACCCAGAGCATGTATTGGTCAAACGGGTATCATCAGCTGAAGAAAGTTTTGATAGAGCGCTACAATCATTTTCCTCATGA

>Glyma15g14446.2   sequence type=CDS   gene model=Glyma15g14446   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACACCGGACCACCTCTTCAACCTCCGCAACAACTTCTACCTCGGCGCTTACCAAGCCGCCATCAACAGCAGCGACGTTGCCAACCTCTCCCAAGAAGATACCCTCGAGCGCGACACCCTCGTCCACCGCTGCTACATCGCCCTCGGCCAGCTCCAGTTCGTCATCTCCGAGATCCACGACGATGCTCCCACACCACTCCAAGCCGTCAAACTCCTCGCCCTCTATTTCTCCTCTCCCGACACCAAGGATTCCGCCATCGCGAGTCTCAAGGAGTGGCTCGCCGATCCCGCTATTGGAAACAACGCCACGCTGAGGCTCGTCGCCGGTCTCGTCTTCCTCCACGAGAATGATTTCAATGAAGCCCTCAAACACACCAACGCCGGTGGAACCATGGAACTGCACGCGTTGAATATTCAGATCTTTATTAAGATGCATAGGTCGGATTACGCAGAGAGGCAGCTGCGGATCATGCAGCAGATTGATGAGGATCACACTCTCACTCAACTCGCCAATGCTTGGCTCAATTTGGCTGGTGGGTCGAAGATCCAGGAGGCGTATCTGATCTTCCAGGATTTGTCGGAGAGGTATCAGTCCACCAGCTTGCTCTTGAATGGCAAGGCTGTTTGCTGCATGCACATGGGCAACTTCGACGAAGCTGAGACCCTTTTGGTTGAAGCTCTTAACAAGGATGCCAGGGATCCAGAAACTCTAGCCAATCTAGTTGTATGCTGTCTTCATCTCGGCAAACCATCTAACAAATCATTCAGCCAGCTGAAACTTTCTCACCCAGAGCATGTATTGGTCAAACGGGTATCATCAGCTGAAGAAAGTTTTGATAGAGCGCTACAATCATTTTCCTCATGA

>Glyma15g14446.3   sequence type=CDS   gene model=Glyma15g14446   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACACCGGACCACCTCTTCAACCTCCGCAACAACTTCTACCTCGGCGCTTACCAAGCCGCCATCAACAGCAGCGACGTTGCCAACCTCTCCCAAGAAGATACCCTCGAGCGCGACACCCTCGTCCACCGCTGCTACATCGCCCTCGGCCAGCTCCAGTTCGTCATCTCCGAGATCCACGACGATGCTCCCACACCACTCCAAGCCGTCAAACTCCTCGCCCTCTATTTCTCCTCTCCCGACACCAAGGATTCCGCCATCGCGAGTCTCAAGGAGTGGCTCGCCGATCCCGCTATTGGAAACAACGCCACGCTGAGGCTCGTCGCCGGTCTCGTCTTCCTCCACGAGAATGATTTCAATGAAGCCCTCAAACACACCAACGCCGGTGGAACCATGGAACTGCACGCGTTGAATATTCAGATCTTTATTAAGATGCATAGGTCGGATTACGCAGAGAGGCAGCTGCGGATCATGCAGCAGATTGATGAGGATCACACTCTCACTCAACTCGCCAATGCTTGGCTCAATTTGGCTGTGGTATTCAGTAATTAA
Predicted protein sequences of Glyma15g14446
>Glyma15g14446.1   sequence type=predicted peptide   gene model=Glyma15g14446   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATPDHLFNLRNNFYLGAYQAAINSSDVANLSQEDTLERDTLVHRCYIALGQLQFVISEIHDDAPTPLQAVKLLALYFSSPDTKDSAIASLKEWLADPAIGNNATLRLVAGLVFLHENDFNEALKHTNAGGTMELHALNIQIFIKMHRSDYAERQLRIMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDLSERYQSTSLLLNGKAVCCMHMGNFDEAETLLVEALNKDARDPETLANLVVCCLHLGKPSNKSFSQLKLSHPEHVLVKRVSSAEESFDRALQSFSS*

>Glyma15g14446.2   sequence type=predicted peptide   gene model=Glyma15g14446   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATPDHLFNLRNNFYLGAYQAAINSSDVANLSQEDTLERDTLVHRCYIALGQLQFVISEIHDDAPTPLQAVKLLALYFSSPDTKDSAIASLKEWLADPAIGNNATLRLVAGLVFLHENDFNEALKHTNAGGTMELHALNIQIFIKMHRSDYAERQLRIMQQIDEDHTLTQLANAWLNLAGGSKIQEAYLIFQDLSERYQSTSLLLNGKAVCCMHMGNFDEAETLLVEALNKDARDPETLANLVVCCLHLGKPSNKSFSQLKLSHPEHVLVKRVSSAEESFDRALQSFSS*

>Glyma15g14446.3   sequence type=predicted peptide   gene model=Glyma15g14446   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATPDHLFNLRNNFYLGAYQAAINSSDVANLSQEDTLERDTLVHRCYIALGQLQFVISEIHDDAPTPLQAVKLLALYFSSPDTKDSAIASLKEWLADPAIGNNATLRLVAGLVFLHENDFNEALKHTNAGGTMELHALNIQIFIKMHRSDYAERQLRIMQQIDEDHTLTQLANAWLNLAVVFSN*






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