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Report for Sequence Feature Glyma15g13960

Feature Type:gene_model
Chromosome:Gm15
Start:10532979
stop:10534263
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g13960
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G38910AT Annotation by Michelle Graham. TAIR10: RmlC-like cupins superfamily protein | chr5:15578811-15579584 FORWARD LENGTH=222 SoyBaseE_val: 6.00E-80ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0030145GO-mf Annotation by Michelle Graham. GO Molecular Function: manganese ion binding SoyBaseN/AISS
GO:0045735GO-mf Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity SoyBaseN/AISS
PF00190PFAM Cupin JGI ISS
UniRef100_G7I6H1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Germin-like protein subfamily 1 member n=1 Tax=Medicago truncatula RepID=G7I6H1_MEDTR SoyBaseE_val: 1.00E-112ISS
UniRef100_I1MG60UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MG60_SOYBN SoyBaseE_val: 1.00E-153ISS

Expression Patterns of Glyma15g13960
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g13960 not represented in the dataset
Glyma15g13960 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g13960
ParalogEvidenceComments
Glyma09g03010 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g13960 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g132100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g13960
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g13960
>Glyma15g13960.1   sequence type=CDS   gene model=Glyma15g13960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAATCTCTCGTTGTTGCTGGCAGTTTTGGCTCTTTCACTTTCAGTTGCTTTAGCAGCTGATAATAGTGCTCTCCAAGATTTCTGTGTGGCAGACCCAAAAGGGCAAGTGCTGGTGAACGGTTTCGCATGCAAGGATCCAAAACTTGTTGAAGCAAACGACTTCTTCTTCAGTGGTCTTCACATAGCAGGCAACACCACAAACCCTAATGGGTCAAAAGTGACACCAGCCTTCGCAACTCAGCTTCCAGGGTTGAACACTCTCGGCATCTCCATGGCTCGCATTGACTATGTTCCATGGGGCATTAACCCTCCTCACACGCACCCTCGCGCCACCGAGGTTTTAACCGTTCTGGATGGTACCTTAGAAGTTGGATTCGTCACTTCCAACCCCGAAAACCGCCACTTCAGGAAGGTCTTACAGAAGGGTGATGTGTTTGTGTTCCCCACAGGACTTGTGCATTACCAGAGAAATGTTGGGTATGACAATGCTGTGGCCATTGCAGCTCTTAGCAGCCAGAATCCAGGACTCATCACCGTTGCTAATGCGGTGTTCGGGGCTACGCCGGATATAGATGGAGACGTTCTTGTTAAGGCTTTCCATTTGGACAAGGCTATCGTCAGTTATCTACAGTCAAAGTTCTAG
Predicted protein sequences of Glyma15g13960
>Glyma15g13960.1   sequence type=predicted peptide   gene model=Glyma15g13960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANLSLLLAVLALSLSVALAADNSALQDFCVADPKGQVLVNGFACKDPKLVEANDFFFSGLHIAGNTTNPNGSKVTPAFATQLPGLNTLGISMARIDYVPWGINPPHTHPRATEVLTVLDGTLEVGFVTSNPENRHFRKVLQKGDVFVFPTGLVHYQRNVGYDNAVAIAALSSQNPGLITVANAVFGATPDIDGDVLVKAFHLDKAIVSYLQSKF*






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