Glyma15g13910 - SoyBase

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Report for Sequence Feature Glyma15g13910

Feature Type:	gene_model
Chromosome:	Gm15
Start:	10504450
stop:	10509301
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g13910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G63890	AT	Annotation by Michelle Graham. TAIR10: histidinol dehydrogenase \| chr5:25565600-25568104 REVERSE LENGTH=466	SoyBase	E_val: 0	ISS
GO:0000105	GO-bp	Annotation by Michelle Graham. GO Biological Process: histidine biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0008295	GO-bp	Annotation by Michelle Graham. GO Biological Process: spermidine biosynthetic process	SoyBase	N/A	ISS
GO:0009411	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0004399	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histidinol dehydrogenase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0051287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NAD binding	SoyBase	N/A	ISS
KOG2697	KOG	Histidinol dehydrogenase	JGI		ISS
PTHR21256	Panther	HISTIDINOL DEHYDROGENASE (HDH)	JGI		ISS
PTHR21256:SF2	Panther	HISTIDINOL DEHYDROGENASE (HDH)	JGI		ISS
PF00815	PFAM	Histidinol dehydrogenase	JGI		ISS
UniRef100_I1MG54	UniRef	Annotation by Michelle Graham. Best UniRef hit: Histidinol dehydrogenase, chloroplastic n=1 Tax=Glycine max RepID=I1MG54_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1MG54	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histidinol dehydrogenase, chloroplastic n=1 Tax=Glycine max RepID=I1MG54_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g13910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g13910

Paralog	Evidence	Comments
Glyma09g02960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g13910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g131700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g13910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g13910

Limit To All Plant Sequences

>Glyma15g13910.2   sequence type=transcript   gene model=Glyma15g13910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAACGCATGCCATTTGGTATCCCTACTATTTTACGAATGAAATAATTTTGTATGTAGTTGTAAAGTATGATGATTCATAACCTTAAACCGGAGCAAAGAGACAAGCGAGAATAGCAGTGTGGTCTCTCTCTCACTCCAACTCTAACCACAGAGACAACAATTCAACAACGTTGCTTCGACGACAATGGAATCTGCGCTTACAGCTTCTAACTGGAACCGTTCTTTGATTCGGATTCGCCACACTAGGCCACGCTTCGTTGCCACTCGCCCCACAGCAATACGGTGCTCCATCAACTCGTATCGCTTGTCCAACCTCACTCCCTCTGAGCTTCAGAGCCTCAAGAGCCGACCTCGTATCGATTTCTCTTCCATTTTCAGTGTTGTTAACCCCATTGTCGATGATGTTCACAAAAGAGGGGATGCTGCAGTTAAAGAATATACTTCAAAGTTTGATAAAGTTGAATTGGATAAAGTAGTTGAGGTTGTCTCGGAGCTCCCTGACCCTGTGCTTGATCCACCTATTAAGGAAGCTTTCGATGTTGCCTACGACAATATTTATGCATTTCATGCTGCTCAGAAGTCACCCGAGAAAAGTGTTGAGAACATGAAAGGAGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCCGTGGGTCTTTATGTTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAGTTCCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAGGAGGTACTGTATTGTGCAAAAAAGGCTGGGGTGACTCACATTCTCAAAGCTGGAGGAGCACAGGCCATATCTGCTATGGCTTGGGGAACAGAAACTTGTCCAAAGGTTGAAAAGATTTTTGGCCCTGGAAACCAATATGTCACTGCTGCAAAAATGATACTTCAAAACAGTGAAGCCATGATTTCAATTGACATGCCGGCTGGTCCATCTGAAGTTTTGGTCATTGCAGACAAGCATGCAATTCCTTCTCATGTAGCAGCTGATTTGCTTTCCCAGGCTGAGCATGGTCCAGATAGTCAGGTTGTTCTTGTGATTGTTGGAGATGGTGTGGATCTGAATGCAATACAGGAGGAACTCAGCAAGCAGTGCGAGAGTCTTCCAAGAGGCGAGTTTGCCTCCAAAGCTCTGAGCCACAGTTTTTTTGTGTATGCACGTGATATGCTTGAGGCTATCAATTTCTCAAACTTATATGCACCTGAGCATCTAATTATCAATGTGAAAGATGCAGAGAAGTGGGAGAGTTTCATTGAGAATGTTCTGTGTTTTTAGGGCCTTGGACACCTGAGAGTGTTGGTGATTATGCAAGCGGGACAAACCATGTCCTTCCTACTTATGGCTATGCAAGAATGTATGGTGGTGTGTCATTGGACTCCTTCCTGAAGTACATAACTGTGCAGTCTCTTTCGGAGGAAGGTCTAAGAAGGCTTGGGCCATATGTAGCAACCATGGCTGAAGTTGAAGGCCTTGAAGCCCACAAGAGAGCAGTTACCTTGAGACTTCAGGACATAGAAGCCAGGCAGGTTTCAAGATGAGATGATGCCTCAATTCATTGTTCTCTTTATCTCTTGTAAGCTACTATAGCTCTTAGTTTTTGCCAAGTCTAGGGCCATTTTCTTGATGAGATTACCTAGATTTAGGTGGCATTAGTAGCTAGAAGTTGCCATTTCAAGTTCATGTAACAATAGCTGGATAACAAACATATACTAGTGCCTAATATGTTGGTGATCTTTGGTTTTGATCAATCAATAATGCATCCATTTTTTTGGTTGCATAATTCATCCAAATATCTAATGTATTTGCTGAACTGTACTTTTTTTTTTCCTTTCCCGATAAGCTTGCTTGAATGTACTAGTACTCGTTCACCATGGTTAAGAAAGTATTTGC

Coding sequences of Glyma15g13910

Limit To All Plant Sequences

>Glyma15g13910.1   sequence type=CDS   gene model=Glyma15g13910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCTGCGCTTACAGCTTCTAACTGGAACCGTTCTTTGATTCGGATTCGCCACACTAGGCCACGCTTCGTTGCCACTCGCCCCACAGCAATACGGTGCTCCATCAACTCGTATCGCTTGTCCAACCTCACTCCCTCTGAGCTTCAGAGCCTCAAGAGCCGACCTCGTATCGATTTCTCTTCCATTTTCAGTGTTGTTAACCCCATTGTCGATGATGTTCACAAAAGAGGGGATGCTGCAGTTAAAGAATATACTTCAAAGTTTGATAAAGTTGAATTGGATAAAGTAGTTGAGGTTGTCTCGGAGCTCCCTGACCCTGTGCTTGATCCACCTATTAAGGAAGCTTTCGATGTTGCCTACGACAATATTTATGCATTTCATGCTGCTCAGAAGTCACCCGAGAAAAGTGTTGAGAACATGAAAGGAGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCCGTGGGTCTTTATGTTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAGTTCCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAGGAGGTACTGTATTGTGCAAAAAAGGCTGGGGTGACTCACATTCTCAAAGCTGGAGGAGCACAGGCCATATCTGCTATGGCTTGGGGAACAGAAACTTGTCCAAAGGTTGAAAAGATTTTTGGCCCTGGAAACCAATATGTCACTGCTGCAAAAATGATACTTCAAAACAGTGAAGCCATGATTTCAATTGACATGCCGGCTGGTCCATCTGAAGTTTTGGTCATTGCAGACAAGCATGCAATTCCTTCTCATGTAGCAGCTGATTTGCTTTCCCAGGCTGAGCATGGTCCAGATAGTCAGGTTGTTCTTGTGATTGTTGGAGATGGTGTGGATCTGAATGCAATACAGGAGGAACTCAGCAAGCAGTGCGAGAGTCTTCCAAGAGGCGAGTTTGCCTCCAAAGCTCTGAGCCACAGTTTTTTTGTGTATGCACGTGATATGCTTGAGGCTATCAATTTCTCAAACTTATATGCACCTGAGCATCTAATTATCAATGTGAAAGATGCAGAGAAGTGGGAGAGTTTCATTGAGAATGCAGGTTCTGTGTTTTTAGGGCCTTGGACACCTGAGAGTGTTGGTGATTATGCAAGCGGGACAAACCATGTCCTTCCTACTTATGGCTATGCAAGAATGTATGGTGGTGTGTCATTGGACTCCTTCCTGAAGTACATAACTGTGCAGTCTCTTTCGGAGGAAGGTCTAAGAAGGCTTGGGCCATATGTAGCAACCATGGCTGAAGTTGAAGGCCTTGAAGCCCACAAGAGAGCAGTTACCTTGAGACTTCAGGACATAGAAGCCAGGCAGGTTTCAAGATGA

>Glyma15g13910.2   sequence type=CDS   gene model=Glyma15g13910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCTGCGCTTACAGCTTCTAACTGGAACCGTTCTTTGATTCGGATTCGCCACACTAGGCCACGCTTCGTTGCCACTCGCCCCACAGCAATACGGTGCTCCATCAACTCGTATCGCTTGTCCAACCTCACTCCCTCTGAGCTTCAGAGCCTCAAGAGCCGACCTCGTATCGATTTCTCTTCCATTTTCAGTGTTGTTAACCCCATTGTCGATGATGTTCACAAAAGAGGGGATGCTGCAGTTAAAGAATATACTTCAAAGTTTGATAAAGTTGAATTGGATAAAGTAGTTGAGGTTGTCTCGGAGCTCCCTGACCCTGTGCTTGATCCACCTATTAAGGAAGCTTTCGATGTTGCCTACGACAATATTTATGCATTTCATGCTGCTCAGAAGTCACCCGAGAAAAGTGTTGAGAACATGAAAGGAGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCCGTGGGTCTTTATGTTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAGTTCCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAGGAGGTACTGTATTGTGCAAAAAAGGCTGGGGTGACTCACATTCTCAAAGCTGGAGGAGCACAGGCCATATCTGCTATGGCTTGGGGAACAGAAACTTGTCCAAAGGTTGAAAAGATTTTTGGCCCTGGAAACCAATATGTCACTGCTGCAAAAATGATACTTCAAAACAGTGAAGCCATGATTTCAATTGACATGCCGGCTGGTCCATCTGAAGTTTTGGTCATTGCAGACAAGCATGCAATTCCTTCTCATGTAGCAGCTGATTTGCTTTCCCAGGCTGAGCATGGTCCAGATAGTCAGGTTGTTCTTGTGATTGTTGGAGATGGTGTGGATCTGAATGCAATACAGGAGGAACTCAGCAAGCAGTGCGAGAGTCTTCCAAGAGGCGAGTTTGCCTCCAAAGCTCTGAGCCACAGTTTTTTTGTGTATGCACGTGATATGCTTGAGGCTATCAATTTCTCAAACTTATATGCACCTGAGCATCTAATTATCAATGTGAAAGATGCAGAGAAGTGGGAGAGTTTCATTGAGAATGTTCTGTGTTTTTAG

Predicted protein sequences of Glyma15g13910

Limit To All Plant Sequences

>Glyma15g13910.1   sequence type=predicted peptide   gene model=Glyma15g13910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESALTASNWNRSLIRIRHTRPRFVATRPTAIRCSINSYRLSNLTPSELQSLKSRPRIDFSSIFSVVNPIVDDVHKRGDAAVKEYTSKFDKVELDKVVEVVSELPDPVLDPPIKEAFDVAYDNIYAFHAAQKSPEKSVENMKGVQCKRVARSINSVGLYVPGGTAVLPSTALMLAVPAQIAGCKTIVLANPPTRDGTTCKEVLYCAKKAGVTHILKAGGAQAISAMAWGTETCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADKHAIPSHVAADLLSQAEHGPDSQVVLVIVGDGVDLNAIQEELSKQCESLPRGEFASKALSHSFFVYARDMLEAINFSNLYAPEHLIINVKDAEKWESFIENAGSVFLGPWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYITVQSLSEEGLRRLGPYVATMAEVEGLEAHKRAVTLRLQDIEARQVSR*

>Glyma15g13910.2   sequence type=predicted peptide   gene model=Glyma15g13910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESALTASNWNRSLIRIRHTRPRFVATRPTAIRCSINSYRLSNLTPSELQSLKSRPRIDFSSIFSVVNPIVDDVHKRGDAAVKEYTSKFDKVELDKVVEVVSELPDPVLDPPIKEAFDVAYDNIYAFHAAQKSPEKSVENMKGVQCKRVARSINSVGLYVPGGTAVLPSTALMLAVPAQIAGCKTIVLANPPTRDGTTCKEVLYCAKKAGVTHILKAGGAQAISAMAWGTETCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADKHAIPSHVAADLLSQAEHGPDSQVVLVIVGDGVDLNAIQEELSKQCESLPRGEFASKALSHSFFVYARDMLEAINFSNLYAPEHLIINVKDAEKWESFIENVLCF*

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