SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G20900 | AT | Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11184103-11185844 REVERSE LENGTH=450 | SoyBase | E_val: 5.00E-96 | ISS |
| GO:0009556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microsporogenesis | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| PTHR23083 | Panther | O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE, OGT | JGI | ISS | |
| PTHR23083:SF200 | Panther | OS05G0506000 PROTEIN | JGI | ISS | |
| PF00515 | PFAM | Tetratricopeptide repeat | JGI | ISS | |
| UniRef100_D7MFH2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Male sterility MS5 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MFH2_ARALL | SoyBase | E_val: 2.00E-100 | ISS |
| UniRef100_UPI000233AED2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233AED2 related cluster n=1 Tax=unknown RepID=UPI000233AED2 | SoyBase | E_val: 0 | ISS |
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Glyma15g13901 not represented in the dataset |
Glyma15g13901 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g02945 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g131600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g13901.1 sequence type=CDS gene model=Glyma15g13901 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGTTTGAAAGAGGCTCTATGGCGAGGTGCTACATGACGCCGCCTCCACAGCCGCCATCGTCGTGGAAGCCGCCACATTCACAGTCCCCCAGTGTGCCGTTTTCAGAGAGAAAAAAATCGCCAAATTCTGCGAATAAAATTGATCTTTTTCATATAATTCACAAGGTTCCTGCTGGGGACTCACCTTATGTTAAAGCCAAGCAAGTTCAGTTAGTGGATAAGGATCCGGGAAGAGCAATTTCCTTGTTTTGGGCTGCCATCAATGCCCGAGATCGTGTTGAAAGCGCCTTGAAGGATATGGCCTTGGTTATGAAGCAATTGAATAGGTCAGATGAGGCAATTGAAGCTATTCGATCTTTCCGTCATCTTTGTCCGTCAGATTCTCGGGATTCTCTGGACAACATTTTGGTTGAGCTGTATAAGAGGTCCGGAAGGATCGATGAAGAGATCGCCATGCTTCATCACAAGTTGAAGCAAATTGAAGATGGCTTGACCTTTGTGGGAAGGACTACAAAACAAGCAAGATCTCAAGGAAAGAAGATTCAAATAACTGCCGAGCAAGAGATATCGAGGATATTGGGAAATTTGGCCTGGGCATACTTGCAAAAAGGAGACTATAAAGCAGCTGAAGAACATTATAGAAAAGCATTGTCTTTTGAGGTTGATAGGAACAAACAGTGCAATCTGGCTATATGTTTAATTCATATGAACAAGATCAAAGAAGCAAAGTTTCTACTCCAGGCAGTTCGCACTGCTACAAAAAATAGAAAGATGGATGATTCCTTTGCCAAATCATTCGAACGAGCTTCTCAGATGCTAATTGAGATAGAGACATCATCATCATCACAGAATGCAGCATTTTCAATGACGACTATGTCGCAGTGCTCTCCACAAAGCTTTGAGAACTCGATTAGAAAGAGCTCTGATAGAGTTCAGAGTGGGTCAGAAAGCCGGTCTGAGACCTCTGAGGGGGATGTACCTCATGCTAGGAGGAGATTGTACCAGTCCCCTGATCCTAGTAGAAGAGATCTTAGTGTTCCTTGCACAAAACCAAAAAGATGTTCATGGGGATTCAATACTGGATATCGAAGGGAAGCTTGGGGTGATGTCAATTCAGATTATAAACCTTCATTTGGGACTCCTCCTAATGATAAGCATGCCACAAGGATGCTAAACTCAAGAGAAAATGGTTTGTCTTCTCCTGCCAATGGGAAGTGGAGGGCAATGACATTGGAAGACCAGGCTATACTAAAGCATGAAGCTACAACAGCAACAAGTTCTGATTCGTTGCATGCTTTGAATACGGAAGTAGCTATGGAGTTTACTGAGAAGGAGAAATCTGCTGCAGATGACAGTAGCTATAGATCAATACTGTCAGAATCACATGTCACAGTTGTGAATGGTGCCAATGAGTTTGCTTCAGGAAAAAGAAAACCTGAGAAGAAAAGTTGGGCTGACATAGTAGAAGAAGAACAAAATGAAGAATATGACTTCTTGAGTGGTTTCACAAATTTTGATGATAAGAATGGTGCAGAAGTTTTTAATGATGAAAATGAAGACTCCAACATAATCTATCCTAGTTCTTGGCTACAGAACCTGCCTGAATGGTCAAACAAAAAGCTTGAATCATCGGATAAGAAAGATGACTATGCATCTGAGAGTACCATTCTGTCAAGGAATCCGACTGCAAGGCGTTCTTTGTGTTTCAACCCGGAACTGATTGGGGAGAAGAAGCTAACTAGGAGAAGCAGGTTACAGGTATTTCAGGATATTACTCTTCTCCCTGAAACCCCAAGATTTGCCTAA
>Glyma15g13901.1 sequence type=predicted peptide gene model=Glyma15g13901 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQFERGSMARCYMTPPPQPPSSWKPPHSQSPSVPFSERKKSPNSANKIDLFHIIHKVPAGDSPYVKAKQVQLVDKDPGRAISLFWAAINARDRVESALKDMALVMKQLNRSDEAIEAIRSFRHLCPSDSRDSLDNILVELYKRSGRIDEEIAMLHHKLKQIEDGLTFVGRTTKQARSQGKKIQITAEQEISRILGNLAWAYLQKGDYKAAEEHYRKALSFEVDRNKQCNLAICLIHMNKIKEAKFLLQAVRTATKNRKMDDSFAKSFERASQMLIEIETSSSSQNAAFSMTTMSQCSPQSFENSIRKSSDRVQSGSESRSETSEGDVPHARRRLYQSPDPSRRDLSVPCTKPKRCSWGFNTGYRREAWGDVNSDYKPSFGTPPNDKHATRMLNSRENGLSSPANGKWRAMTLEDQAILKHEATTATSSDSLHALNTEVAMEFTEKEKSAADDSSYRSILSESHVTVVNGANEFASGKRKPEKKSWADIVEEEQNEEYDFLSGFTNFDDKNGAEVFNDENEDSNIIYPSSWLQNLPEWSNKKLESSDKKDDYASESTILSRNPTARRSLCFNPELIGEKKLTRRSRLQVFQDITLLPETPRFA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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