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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G20940 | AT | Annotation by Michelle Graham. TAIR10: Leucine-rich receptor-like protein kinase family protein | chr4:11202728-11206038 FORWARD LENGTH=977 | SoyBase | E_val: 0 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:1901527 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway involved in stomatal movement | SoyBase | N/A | ISS |
| GO:1901528 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide mediated signaling pathway involved in stomatal movement | SoyBase | N/A | ISS |
| GO:1901529 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of anion channel activity | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG1187 | KOG | Serine/threonine protein kinase | JGI | ISS | |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24420:SF466 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| PF07714 | PFAM | Protein tyrosine kinase | JGI | ISS | |
| PF08263 | PFAM | Leucine rich repeat N-terminal domain | JGI | ISS | |
| UniRef100_B9SB23 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SB23_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D7A9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D7A9 related cluster n=1 Tax=unknown RepID=UPI000233D7A9 | SoyBase | E_val: 0 | ISS |
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Glyma15g13840 not represented in the dataset |
Glyma15g13840 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g02881 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g130900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g13840.1 sequence type=CDS gene model=Glyma15g13840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCCTTTTAGCCTTTTAGTGTTATCTTTATATTTCTTCTCTGTGGTGGGGCAGCTTCCTTCTCAGGACATTTTAGCATTGCTGGAGTTTAAGAAAGGCATCAAGCATGACCCTACTGGTTATGTTCTCAATTCCTGGAATGAGGAATCCATTGACTTTGATGGATGCCCATCTTCATGGAATGGAGTTCTGTGCAATGCTGGCAATGTTGCTGGGGTTGTCCTTGATAACTTGGGTCTCTCTGCTGACCCTGACCTGAGTGTGTTTTCAAATCTTACAAAGCTTGTGAAACTCTCCATGTCCAACAATTCCATATCAGGAACACTACCTGACAACATTGCTGATTTCAAAAGCCTTGAATTCTTGGATATCTCCAATAACCTCTTTTCCTCATCCTTGCCATTGGGAATTGGTGAGTTACGGAGCTTGCAGAATCTGTCATTGGCTGGAAATAACTTCTCCGGCCCAATTCCTGACTCTATTTCAGAAATGGCCTCCATCAAGTCCCTGGACTTGAGCCGCAACTCCTTCTCTGGAATGCTGCCAGTGACGTTGACTAAGACGACTAGTCTTGTATCTCTTAACTTGTCTCATAATGGCTTCACTGGAAAAGTTCCCAAAGGTTTTGAGCTGATCCCCGCTCTTGAAAAACTTGACTTGCATGGAAATATGCTTGAAGGTAATTTGGATGTTGTATTTATGCTTTTATCAAGTGCCAGCTATGTTGATTTAAGTGAGAACATGCTGTCAAGTTCTGATTCCAAGAAGAAGTTTCTACCACGAATATCTGAAAGTATTAAGCATCTGAATCTAAGCCACAACAAGCTTACTGGGTCATTGGCTAGTGGAGCTGCTGAACCTGTTTTTGAAAACTTGAAGGTGTTGGACCTCAGCTACAATCAGTTGGATGGAGAATTGCCTGGATTTGATTTTGTTTATGATCTTGAAGTTCTTAGACTTAGCAACAACAGATTTTCAGGATTTATTCCTAATGGCCTGCTGAAAGGAGACTCTTTGGTTTTAACTGAATTGGATTTGAGTGCCAACAACCTCTCAGGGCCACTAAGTATAATTACATCAACAACACTTCATTCTCTTAATCTCTCATCAAATGAGTTCACGGGTGATCTGCCGCTGCTGACTGGAAGCTGTGCTGTACTTGATCTGTCAAACAACAAATTAGAAGGAAACTTGACCAGGATGTTGAAATGGGGGAATATAGAATTTCTTGATCTCAGTGGGAATCATTTGACGGGGACCATCCCTGAGGAAACTCCTCAATTTTTGCGATTGAGTTATTTGAACCTATCCCATAATTCTCTAAGCAGCTCCCTTCCAAAAGTCTTAACACAGTATCCAAAGCTTAGAGTGCTCGACATTAGTTTCAACCAATTGGATGGACTACTTCTAGCTAATCTGCTCACACTGTCCACATTGCAAGAGCTGCACCTTGAAAATAATATGATCTCTGGTGGCATCAAGTTTTCATCTTCTGCTGACCAATCTGATCTTCAGATTCTTGATCTTTCTCACAACCAGCTTAATGGCTATTTTCCTGATGAGTTTGGGTCATTAACTGGCCTGAAAGTGCTAAATATTGCTGGAAATAATTTTTCTGGTTCTCTTCCAACTACCATTGCTGACATGAGTTCACTAGACTCCCTGGATATATCAGAGAATCATTTTGCTGGTCCTCTACCAAGTAACATCCCAAAGGGGCTCCAAAACTTTAATGCTTCACAAAATGATCTGTCAGGACTTGTCCCGGAAGTTCTTAGAAAGTTTCCTAGTTCTTCTTTCTTTCCTGGGAATACCAAGTTACATTTTCCAAATGGTCCTCCTGGATCAGTCAGTTCACCTGCTAAAAGTTCCAAGAGGAAGCATATGAACACCATAGTTAAAGTCATAATCATAGTGTCATGCGTGGTTGCACTCTTCATATTAATCTTGCTTGCTGTCTTCATACACTACATACGTATATCAAGATCTCCACAAGAATATGATGCAAGTAAGGATATCCACAGGCATCCTCAACCAATTATCTCGGCTCCTGTTCGTACGACTGATAGGGGTGGTGCTTTGGTTGTTTCAGCTGAGGACCTTGTGACCTCACGCAAAGAGTCACCATCGGAGATTATCAGCTCTGACGAAAAAATGGCAGCTGTAACGGGGTTCTCTCCATCAAAACAAAGCCACTTTTCATGGTCACCAGAATCTGGTGATTCACTTACTGGTGAAAATCTTGCAAGACTAGATACGAGATCGCCAGATCGGTTGATTGGTGAGCTGCATTTTCTGGATGATACGATAACATTGACACCTGAGGAGCTCTCAAGGGCCCCAGCTGAAGTTTTGGGAAGAAGTAGTCATGGTACTTCTTACAAGGCAACTCTGGAGAATGGTTTGTTGTTGAGAGTGAAGTGGTTGAGAGAAGGAGTGGCAAAACAGAGAAAAGAATTTGTCAAGGAGATGAAGAAATTTGCAAACATCAGACATCCAAATGTTGTAGGATTGAGAGGATATTATTGGGGTCCTACACAGCATGAAAAGCTTATACTTTCAGATTACATCTCACCCGGAAGTCTTGCTAGTTTTCTTTATGATCGACCAGGAAGAAAAGGTCCACCACTAACTTGGGCCCAGAGGCTCAAAATAGCAGTCGATGTAGCACGTGGTCTGAACTATCTCCATTTTGATCGTGCTGTTCCTCACGGGAATCTCAAAGCTACAAATGTGTTGTTAGATACAACTGATATGAATGCACGTGTCGCCGATTACTGCCTTCACCGACTCATGACTCGAGCTGGTAACATTGAACAGATTCTTGATGCTGGGGTCTTGGGTTATCGTGCACCAGAGTTAGCTGCTTCCAAGAAGCCAATGCCCTCCTTCAAGTCAGATGTTTATGCTTTTGGAGTGATACTTTTGGAACTTCTAACTGGAAGGTGTGCTGGTGATGTTATATCTAGTGAGGAGGGAGGTGTTGATCTGACAGATTGGGTAAGGTTGCGCGTAGCAGAAGGCCGAGGCTCAGAATGTTTTGATGCTACCTTGATGCCAGAAATGAGCAATCCAATTGCAGAAAAGGGAATGAAGGAGGTCCTGGGAATAGTGATGCGGTGCATTCGGTCTGTTTCTGAAAGGCCTGGTATCAAGACTATTTATGAAGATCTCTCTTCTATATAA
>Glyma15g13840.1 sequence type=predicted peptide gene model=Glyma15g13840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKPFSLLVLSLYFFSVVGQLPSQDILALLEFKKGIKHDPTGYVLNSWNEESIDFDGCPSSWNGVLCNAGNVAGVVLDNLGLSADPDLSVFSNLTKLVKLSMSNNSISGTLPDNIADFKSLEFLDISNNLFSSSLPLGIGELRSLQNLSLAGNNFSGPIPDSISEMASIKSLDLSRNSFSGMLPVTLTKTTSLVSLNLSHNGFTGKVPKGFELIPALEKLDLHGNMLEGNLDVVFMLLSSASYVDLSENMLSSSDSKKKFLPRISESIKHLNLSHNKLTGSLASGAAEPVFENLKVLDLSYNQLDGELPGFDFVYDLEVLRLSNNRFSGFIPNGLLKGDSLVLTELDLSANNLSGPLSIITSTTLHSLNLSSNEFTGDLPLLTGSCAVLDLSNNKLEGNLTRMLKWGNIEFLDLSGNHLTGTIPEETPQFLRLSYLNLSHNSLSSSLPKVLTQYPKLRVLDISFNQLDGLLLANLLTLSTLQELHLENNMISGGIKFSSSADQSDLQILDLSHNQLNGYFPDEFGSLTGLKVLNIAGNNFSGSLPTTIADMSSLDSLDISENHFAGPLPSNIPKGLQNFNASQNDLSGLVPEVLRKFPSSSFFPGNTKLHFPNGPPGSVSSPAKSSKRKHMNTIVKVIIIVSCVVALFILILLAVFIHYIRISRSPQEYDASKDIHRHPQPIISAPVRTTDRGGALVVSAEDLVTSRKESPSEIISSDEKMAAVTGFSPSKQSHFSWSPESGDSLTGENLARLDTRSPDRLIGELHFLDDTITLTPEELSRAPAEVLGRSSHGTSYKATLENGLLLRVKWLREGVAKQRKEFVKEMKKFANIRHPNVVGLRGYYWGPTQHEKLILSDYISPGSLASFLYDRPGRKGPPLTWAQRLKIAVDVARGLNYLHFDRAVPHGNLKATNVLLDTTDMNARVADYCLHRLMTRAGNIEQILDAGVLGYRAPELAASKKPMPSFKSDVYAFGVILLELLTGRCAGDVISSEEGGVDLTDWVRLRVAEGRGSECFDATLMPEMSNPIAEKGMKEVLGIVMRCIRSVSERPGIKTIYEDLSSI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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