SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G46920 | AT | Annotation by Michelle Graham. TAIR10: Intron maturase, type II family protein | chr5:19053668-19055875 FORWARD LENGTH=735 | SoyBase | E_val: 0 | ISS |
| GO:0006278 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0006397 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA processing | SoyBase | N/A | ISS |
| GO:0008380 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0003964 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA-directed DNA polymerase activity | SoyBase | N/A | ISS |
| PF00078 | PFAM | Reverse transcriptase (RNA-dependent DNA polymerase) | JGI | ISS | |
| PF01348 | PFAM | Type II intron maturase | JGI | ISS | |
| UniRef100_B9SS16 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SS16_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233AECC | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233AECC related cluster n=1 Tax=unknown RepID=UPI000233AECC | SoyBase | E_val: 0 | ISS |
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Glyma15g13600 not represented in the dataset |
Glyma15g13600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g02720 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g129400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g13600.3 sequence type=transcript gene model=Glyma15g13600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCAAACTCAAAGTCCTAGGAGCATATAACATTAGCCGCAGGGTTTTTGTTGGGTTTTGCTCTTCAACTTTCTTCCTTCAGTCCATTCCCACCCAATGCCCTGAGAGACCCAAAACACCGAAATGCGTCGACGCCTCCCTCGCGTCTCCCACTCCATCCTCTCCAAACCCACCAATAACAACAATCCCCTACGCTTCCTCCCCATCTTCTCTATCCTACACCCTCCTCCTTCCCCCCTTCGCCGCTTCTCCTCCGCCACCCTCTCCAAAGACGACGGCGTCTCCCTCTGCTGCCAGATGTGGATTGACAACTTCCGCCACCCCGACCGCGCCGTCACCAACCTCTCCCCCCTCCTCCGCCGCTTCGACCTCTGGGTCCTCGCCTACCAGAAGGTCGCCACCGACGACACCGGCTCCTACACGCCGCGCTCCTCCCTCCACGCCTCCACTCTTCAGGACCTCCTCGCCCTCCGCAACGCCGTCCTCGACGCCAAGTTCAAGTGGGGCGCCAGGCTCAAGTTCTTCATCAAATCCCCCAAGGACAAAACCGACTACGACTCCCTCTCCAAGCGCAAAATCAAAACCATCCTCACCACCACGCAGCCGGCTCCCTTCCAGGACAGAATTGTCCATGAAGTTCTCCTTATGATCCTCGAACCGATCTACGAGCCGAGGTTTTCGCCAAAGTCGTATGCTTTTCGACCCGGTAGGACGCCCCACACTGTTTTGAGGGTTATTAGGAGAAGCTTTGCTGGGTACTTGTGGTATATAAAGGGTAATTTTAGTGTTTTGTTAGATGGGATGAAGGTGGGGTTGGTGATTAATTCTGTTATGAGAGATGTTAGGGATAAGTTGGTTGTTGATTTGATAAAGGATGCTTTGGTTACGCCAGTGGTTGTTACTACTGTGGAGAAGAAGGAGAAGAAGAAGAAGAGGAAGTATCAGAAGAAGAGGGTGTTGGCTGAGGATGAGCCTAAGCCTGATCCTTATTGGTTGGATACTTTTTTCGGGTTTGCGCCGGAGGAGGCAGAGAGGGTGCCCAATTGGGGGCACTGTGGGGTGCTTAGTCCGCTTTTGGCGAATGTTTGTTTGGACGAGTTGGATAGGTGGATGGAGGGGAAGATTAAAGAGTTTTATGTTCCTTCCAAGAGTGATGTTATATGGAATAGTCCTGAAGAGGAGCAGGGGAACACATCGTGGCCGGAGTTCGTGCCCACGAGTGGGCCAGATAAGACGAGGAAGATGGATTTCCTAAGGTATGGAGGGCATGTCTTGATTGGTGTTAGAGGGCCTAGGGCTGATGCGGCTGCATTGAGGAAGCAGTTGATTGAGTTTTGTGATCTAAGGTTTATGCTCAAGCTTGATAATGAGAGCCTCCCTATAGAGCATATAACCAAAGGGATAATGTTTTTGGATCATGTGTTGTGTAGGAGGGTTGTGTATCCAACTCTTAGGTATACTGCCACTGGTGGTAAGATCATAAGTGAGAAGGGTGTAGGGACGTTGTTGTCGGTCACGGCAAGCTTGAAACAATGTATTAAGCAGTTTAGGAAGTTGAGTTTTCTCAAGGGGGATAGGGATCCGGATCCCCAGCCTTGTTTTAGGATGTTTCATGCCACACAGGCGCATACCAATGCTCAAATGAACAAGTTTTTGTCAACAATGGTTGAGTGGTATAGATATGCAGACAATAGGAAGAAGATTGTGAACTTCTGTTCTTATATCATAAGAGGCTCCCTTGCTAAGCTGTATGCTGCAAAGTACAAGCTTCGGTCACGTGCAAAAGTGTACAAGATTGGTGCTCGTAACCTGAGCCGTCCATTGAAGGAGAAAAAAGGACAGTCTCCTGAGTACCAGAATTTGCTGAGGATGGGTCTTGCCGAGTCAATAGACGGGCTACAATATACGAGGATGTCTCTTGTGCCTGAGACAGATTACTCCCCGTTCCCTAGTAATTGGAGGCCTGACCATGAAAAGTTGTTGCTAGAATACATAAAACTGGAAGATCCAAAAACTTTGGAGGAACAACGGGATTGCATCAGAGAACAAGGTCTTGTTTCACCTCAAGACTATATTTCAAGGCTTGTGTGGAATTACAAAAGGAATTCTCTTCCTATGGACCAGCTGTCCTTAGTAAGGAGCAACGAAAGTGTTGTAGGAAATCAGCATTTGCTAGTTGGCTCAAACCAGGATGACCAGGACCACACAAACAAAGAGGAAGAAAATGATGGAAGGATGAATGCAGCAGCACAAATGTAACACAAAGTTACCGCCATTACGAGGCAACCAGCAATGATTGTTTGCACTGTATTTCAGATTCAGATGATGGCATGACTTTCATGAGCAGTTAGCATGGATGTCAAGTTTTGGAATTAATCGACGCCAAAATGTTACACTTGGCATCTTCGTTGAATCTGTCTTTGATGTTCAATAAACCCTGCTTGTCAGAGAAAGGATACAATAACTGAAGAGTGGAGGGCTCTTACGTGCAGACATCGACTCGGACAAAATATTTAACACTGCCACTCTGCTAGTGAACACTGACTGGGCTATCAGGTGGCAAAAATCCATGCACTTGAAAATGTGGAAAGTAATTCCACATACTGTTCTGGAGTGCTATATCTGTGAGTCCACAGGAAGGAGTATGCAGCTTCCTGTGGGAAGCTAATAAAGCGTGTTCCTTGTGGATGCATAGCCAGCATAGGACAAGGCAAGGTGTGAATGGAACTCCAACAAGATCTTTTCAAATATCATGTTAATTTTGTAAATTGGCTATTTGTTCATATGTGCTTGCCCCAATTCTTTTTTAATGATTTGAGTATACCTGCTACTCTTAGTTCTTGACCACACATTTTATAGTTGTATCTTTTTTTTCACTTTATTTTCTGTACGGGCAACTCAAAAGCTGTAAGAACTTCAAAGCAGTGTACTAAGAAGAAGCTCATTATACTACATTATGAGTTTCTCCTTTGATTCCTCATTTTAAAAAAAATAAATTATAATTTAGTTTTGTAAATTCATTTC
>Glyma15g13600.2 sequence type=CDS gene model=Glyma15g13600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTCGACGCCTCCCTCGCGTCTCCCACTCCATCCTCTCCAAACCCACCAATAACAACAATCCCCTACGCTTCCTCCCCATCTTCTCTATCCTACACCCTCCTCCTTCCCCCCTTCGCCGCTTCTCCTCCGCCACCCTCTCCAAAGACGACGGCGTCTCCCTCTGCTGCCAGATGTGGATTGACAACTTCCGCCACCCCGACCGCGCCGTCACCAACCTCTCCCCCCTCCTCCGCCGCTTCGACCTCTGGGTCCTCGCCTACCAGAAGGTCGCCACCGACGACACCGGCTCCTACACGCCGCGCTCCTCCCTCCACGCCTCCACTCTTCAGGACCTCCTCGCCCTCCGCAACGCCGTCCTCGACGCCAAGTTCAAGTGGGGCGCCAGGCTCAAGTTCTTCATCAAATCCCCCAAGGACAAAACCGACTACGACTCCCTCTCCAAGCGCAAAATCAAAACCATCCTCACCACCACGCAGCCGGCTCCCTTCCAGGACAGAATTGTCCATGAAGTTCTCCTTATGATCCTCGAACCGATCTACGAGCCGAGGTTTTCGCCAAAGTCGTATGCTTTTCGACCCGGTAGGACGCCCCACACTGTTTTGAGGGTTATTAGGAGAAGCTTTGCTGGGTACTTGTGGTATATAAAGGGTAATTTTAGTGTTTTGTTAGATGGGATGAAGGTGGGGTTGGTGATTAATTCTGTTATGAGAGATGTTAGGGATAAGTTGGTTGTTGATTTGATAAAGGATGCTTTGGTTACGCCAGTGGTTGTTACTACTGTGGAGAAGAAGGAGAAGAAGAAGAAGAGGAAGTATCAGAAGAAGAGGGTGTTGGCTGAGGATGAGCCTAAGCCTGATCCTTATTGGTTGGATACTTTTTTCGGGTTTGCGCCGGAGGAGGCAGAGAGGGTGCCCAATTGGGGGCACTGTGGGGTGCTTAGTCCGCTTTTGGCGAATGTTTGTTTGGACGAGTTGGATAGGTGGATGGAGGGGAAGATTAAAGAGTTTTATGTTCCTTCCAAGAGTGATGTTATATGGAATAGTCCTGAAGAGGAGCAGGGGAACACATCGTGGCCGGAGTTCGTGCCCACGAGTGGGCCAGATAAGACGAGGAAGATGGATTTCCTAAGGTATGGAGGGCATGTCTTGATTGGTGTTAGAGGGCCTAGGGCTGATGCGGCTGCATTGAGGAAGCAGTTGATTGAGTTTTGTGATCTAAGGTTTATGCTCAAGCTTGATAATGAGAGCCTCCCTATAGAGCATATAACCAAAGGGATAATGTTTTTGGATCATGTGTTGTGTAGGAGGGTTGTGTATCCAACTCTTAGGTATACTGCCACTGGTGGTAAGATCATAAGTGAGAAGGGTGTAGGGACGTTGTTGTCGGTCACGGCAAGCTTGAAACAATGTATTAAGCAGTTTAGGAAGTTGAGTTTTCTCAAGGGGGATAGGGATCCGGATCCCCAGCCTTGTTTTAGGATGTTTCATGCCACACAGGCGCATACCAATGCTCAAATGAACAAGTTTTTGTCAACAATGGTTGAGTGGTATAGATATGCAGACAATAGGAAGAAGATTGTGAACTTCTGTTCTTATATCATAAGAGGCTCCCTTGCTAAGCTGTATGCTGCAAAGTACAAGCTTCGGTCACGTGCAAAAGTGTACAAGATTGGTGCTCGTAACCTGAGCCGTCCATTGAAGGAGAAAAAAGGACAGTCTCCTGAGTACCAGAATTTGCTGAGGATGGGTCTTGCCGAGTCAATAGACGGGCTACAATATACGAGGATGTCTCTTGTGCCTGAGACAGATTACTCCCCGTTCCCTAGTAATTGGAGGCCTGACCATGAAAAGTTGTTGCTAGAATACATAAAACTGGAAGATCCAAAAACTTTGGAGGAACAACGGGATTGCATCAGAGAACAAGGTCTTGTTTCACCTCAAGACTATATTTCAAGGCTTGTGTGGAATTACAAAAGGAATTCTCTTCCTATGGACCAGCTGTCCTTAGTAAGGAGCAACGAAAGTGTTGTAGGAAATCAGCATTTGCTAGTTGGCTCAAACCAGGATGACCAGGACCACACAAACAAAGAGGAAGAAAATGATGGAAGGATGAATGCAGCAGCACAAATGTAA >Glyma15g13600.3 sequence type=CDS gene model=Glyma15g13600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTCGACGCCTCCCTCGCGTCTCCCACTCCATCCTCTCCAAACCCACCAATAACAACAATCCCCTACGCTTCCTCCCCATCTTCTCTATCCTACACCCTCCTCCTTCCCCCCTTCGCCGCTTCTCCTCCGCCACCCTCTCCAAAGACGACGGCGTCTCCCTCTGCTGCCAGATGTGGATTGACAACTTCCGCCACCCCGACCGCGCCGTCACCAACCTCTCCCCCCTCCTCCGCCGCTTCGACCTCTGGGTCCTCGCCTACCAGAAGGTCGCCACCGACGACACCGGCTCCTACACGCCGCGCTCCTCCCTCCACGCCTCCACTCTTCAGGACCTCCTCGCCCTCCGCAACGCCGTCCTCGACGCCAAGTTCAAGTGGGGCGCCAGGCTCAAGTTCTTCATCAAATCCCCCAAGGACAAAACCGACTACGACTCCCTCTCCAAGCGCAAAATCAAAACCATCCTCACCACCACGCAGCCGGCTCCCTTCCAGGACAGAATTGTCCATGAAGTTCTCCTTATGATCCTCGAACCGATCTACGAGCCGAGGTTTTCGCCAAAGTCGTATGCTTTTCGACCCGGTAGGACGCCCCACACTGTTTTGAGGGTTATTAGGAGAAGCTTTGCTGGGTACTTGTGGTATATAAAGGGTAATTTTAGTGTTTTGTTAGATGGGATGAAGGTGGGGTTGGTGATTAATTCTGTTATGAGAGATGTTAGGGATAAGTTGGTTGTTGATTTGATAAAGGATGCTTTGGTTACGCCAGTGGTTGTTACTACTGTGGAGAAGAAGGAGAAGAAGAAGAAGAGGAAGTATCAGAAGAAGAGGGTGTTGGCTGAGGATGAGCCTAAGCCTGATCCTTATTGGTTGGATACTTTTTTCGGGTTTGCGCCGGAGGAGGCAGAGAGGGTGCCCAATTGGGGGCACTGTGGGGTGCTTAGTCCGCTTTTGGCGAATGTTTGTTTGGACGAGTTGGATAGGTGGATGGAGGGGAAGATTAAAGAGTTTTATGTTCCTTCCAAGAGTGATGTTATATGGAATAGTCCTGAAGAGGAGCAGGGGAACACATCGTGGCCGGAGTTCGTGCCCACGAGTGGGCCAGATAAGACGAGGAAGATGGATTTCCTAAGGTATGGAGGGCATGTCTTGATTGGTGTTAGAGGGCCTAGGGCTGATGCGGCTGCATTGAGGAAGCAGTTGATTGAGTTTTGTGATCTAAGGTTTATGCTCAAGCTTGATAATGAGAGCCTCCCTATAGAGCATATAACCAAAGGGATAATGTTTTTGGATCATGTGTTGTGTAGGAGGGTTGTGTATCCAACTCTTAGGTATACTGCCACTGGTGGTAAGATCATAAGTGAGAAGGGTGTAGGGACGTTGTTGTCGGTCACGGCAAGCTTGAAACAATGTATTAAGCAGTTTAGGAAGTTGAGTTTTCTCAAGGGGGATAGGGATCCGGATCCCCAGCCTTGTTTTAGGATGTTTCATGCCACACAGGCGCATACCAATGCTCAAATGAACAAGTTTTTGTCAACAATGGTTGAGTGGTATAGATATGCAGACAATAGGAAGAAGATTGTGAACTTCTGTTCTTATATCATAAGAGGCTCCCTTGCTAAGCTGTATGCTGCAAAGTACAAGCTTCGGTCACGTGCAAAAGTGTACAAGATTGGTGCTCGTAACCTGAGCCGTCCATTGAAGGAGAAAAAAGGACAGTCTCCTGAGTACCAGAATTTGCTGAGGATGGGTCTTGCCGAGTCAATAGACGGGCTACAATATACGAGGATGTCTCTTGTGCCTGAGACAGATTACTCCCCGTTCCCTAGTAATTGGAGGCCTGACCATGAAAAGTTGTTGCTAGAATACATAAAACTGGAAGATCCAAAAACTTTGGAGGAACAACGGGATTGCATCAGAGAACAAGGTCTTGTTTCACCTCAAGACTATATTTCAAGGCTTGTGTGGAATTACAAAAGGAATTCTCTTCCTATGGACCAGCTGTCCTTAGTAAGGAGCAACGAAAGTGTTGTAGGAAATCAGCATTTGCTAGTTGGCTCAAACCAGGATGACCAGGACCACACAAACAAAGAGGAAGAAAATGATGGAAGGATGAATGCAGCAGCACAAATGTAA
>Glyma15g13600.2 sequence type=predicted peptide gene model=Glyma15g13600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRRRLPRVSHSILSKPTNNNNPLRFLPIFSILHPPPSPLRRFSSATLSKDDGVSLCCQMWIDNFRHPDRAVTNLSPLLRRFDLWVLAYQKVATDDTGSYTPRSSLHASTLQDLLALRNAVLDAKFKWGARLKFFIKSPKDKTDYDSLSKRKIKTILTTTQPAPFQDRIVHEVLLMILEPIYEPRFSPKSYAFRPGRTPHTVLRVIRRSFAGYLWYIKGNFSVLLDGMKVGLVINSVMRDVRDKLVVDLIKDALVTPVVVTTVEKKEKKKKRKYQKKRVLAEDEPKPDPYWLDTFFGFAPEEAERVPNWGHCGVLSPLLANVCLDELDRWMEGKIKEFYVPSKSDVIWNSPEEEQGNTSWPEFVPTSGPDKTRKMDFLRYGGHVLIGVRGPRADAAALRKQLIEFCDLRFMLKLDNESLPIEHITKGIMFLDHVLCRRVVYPTLRYTATGGKIISEKGVGTLLSVTASLKQCIKQFRKLSFLKGDRDPDPQPCFRMFHATQAHTNAQMNKFLSTMVEWYRYADNRKKIVNFCSYIIRGSLAKLYAAKYKLRSRAKVYKIGARNLSRPLKEKKGQSPEYQNLLRMGLAESIDGLQYTRMSLVPETDYSPFPSNWRPDHEKLLLEYIKLEDPKTLEEQRDCIREQGLVSPQDYISRLVWNYKRNSLPMDQLSLVRSNESVVGNQHLLVGSNQDDQDHTNKEEENDGRMNAAAQM* >Glyma15g13600.3 sequence type=predicted peptide gene model=Glyma15g13600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRRRLPRVSHSILSKPTNNNNPLRFLPIFSILHPPPSPLRRFSSATLSKDDGVSLCCQMWIDNFRHPDRAVTNLSPLLRRFDLWVLAYQKVATDDTGSYTPRSSLHASTLQDLLALRNAVLDAKFKWGARLKFFIKSPKDKTDYDSLSKRKIKTILTTTQPAPFQDRIVHEVLLMILEPIYEPRFSPKSYAFRPGRTPHTVLRVIRRSFAGYLWYIKGNFSVLLDGMKVGLVINSVMRDVRDKLVVDLIKDALVTPVVVTTVEKKEKKKKRKYQKKRVLAEDEPKPDPYWLDTFFGFAPEEAERVPNWGHCGVLSPLLANVCLDELDRWMEGKIKEFYVPSKSDVIWNSPEEEQGNTSWPEFVPTSGPDKTRKMDFLRYGGHVLIGVRGPRADAAALRKQLIEFCDLRFMLKLDNESLPIEHITKGIMFLDHVLCRRVVYPTLRYTATGGKIISEKGVGTLLSVTASLKQCIKQFRKLSFLKGDRDPDPQPCFRMFHATQAHTNAQMNKFLSTMVEWYRYADNRKKIVNFCSYIIRGSLAKLYAAKYKLRSRAKVYKIGARNLSRPLKEKKGQSPEYQNLLRMGLAESIDGLQYTRMSLVPETDYSPFPSNWRPDHEKLLLEYIKLEDPKTLEEQRDCIREQGLVSPQDYISRLVWNYKRNSLPMDQLSLVRSNESVVGNQHLLVGSNQDDQDHTNKEEENDGRMNAAAQM*
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