SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G45160 | AT | Annotation by Michelle Graham. TAIR10: Root hair defective 3 GTP-binding protein (RHD3) | chr5:18264991-18270035 FORWARD LENGTH=834 | SoyBase | E_val: 0 | ISS |
| GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| GO:0016817 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides | SoyBase | N/A | ISS |
| KOG2203 | KOG | GTP-binding protein | JGI | ISS | |
| PTHR10751 | Panther | GUANYLATE-BINDING PROTEIN | JGI | ISS | |
| PTHR10751:SF2 | Panther | INTERFERON-INDUCED GUANYLATE-BINDING PROTEIN | JGI | ISS | |
| PTHR11649 | Panther | MSS1/TRME-RELATED GTP-BINDING PROTEIN | JGI | ISS | |
| PTHR11649:SF3 | Panther | GTP-BINDING PROTEIN ERA-RELATED | JGI | ISS | |
| PF05879 | PFAM | Root hair defective 3 GTP-binding protein (RHD3) | JGI | ISS | |
| UniRef100_B9RQ05 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein SEY1, putative n=1 Tax=Ricinus communis RepID=B9RQ05_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MG10 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MG10_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g13380 not represented in the dataset |
Glyma15g13380 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g02490 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g127700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g13380.2 sequence type=transcript gene model=Glyma15g13380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTCGTTGGACGCACATCAAACAGAAGGCAACAAGACCCGTGTTTCTTCTCATCATTTCATTCCTTTTCCCTCGGTGGCAGCAGTAGCAAACGCACACCACAATCAAAGAACAATTTCCACTCGAAGCAAAGCGAATCAGAGATCCAAACTCAGTTCTCCAACTCTCTGATCTCAACTTCCACTTCAGCTTCACGAGCCATGGCCAACGACGATTGCTGCGCCACGCAACTCATCGACGGCGACGGCGAGTTCAACGTCGCCGGCCTCGACAACTTTATCAGAACCGTCAATCTCGCCTCCTGCGGCCTCTCCTATGCCGTCGTCGCAATCATGGGACCTCAGAGTAGCGGGAAGAGCACGTTAATGAATCATCTTTTCCACACAAGTTTCAGGGAGATGGATGCTTTCAGGGGAAGATCGCAAACGACCAAGGGCATTTGGATAGCCAAGTGTGTTGGGATTGAGCCAAGCACAATTGCTATGGATTTAGAGGGTACTGATGGAAGAGAGAGAGGCGAGGATGACACTGCTTTCGAGAAACAGAGTGCTCTTTTTGCTTTGGCAATATCAGATATTGTTCTGATAAACATGTGGTGTCATGATATTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAGGTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATACGTGATAAAACAAAGACCCCACTTGAAAATTTGGAGCCTATTCTAAGAGAAGATATTCAGAAGATTTGGGATGGCGTTCGAAAACCCCAAGCCCATCTACATACTCCTCTTAGTGAATTTTTTAATGTGGAGGTTACTGCTTTGTCAAGCTATGAGGACAAGGAGGACAAGTTCAAAGAGGAGGTTGCTCAATTACGGCAGCGTTTCTTCCATTCTATAGCGCCTGGAGGTCTGGCTGGTGATCGGCGTGGTGTTGTGCCTGCTTCTGCCTTTTCTATTAGTGCACAACAAATATGGAAAGTCATTCGGGAAAACAAGGATCTCGATCTTCCAGCTCATAAGGTAATGGTTGCAACAGTGCGTTGTGAAGAGATTGCTAATGAAAAACTTAACCGACTACGCTCTGACAAGGGTTGGTTGGAATTGGAGGAAGCTATTGAATTGGGTCCTGTACGAGGTTTTGGGGAAAAGCTGAGCTCCATTATTGATGCCTGCCTTTCACAATATGATGAGGAGGCAATCTTCTTTGATGAAGCTGTGAGAAATGCAAAACGAAAGCAATTGGAATCAAAGGCTTTGGATCTTGTGTACCCTGCTTATACAACATTGTTAGGGCATATACGCTCTAAAGCTCTAGATGATTTTAAGACTAAGCTGGAACAATCACTAAACAATGGAGAAGGGTTTGCTTCATCTGTTCGCACTTGGACTCAGTCTACTATGCTTCAGTTTGACAAAGCATCTGCTGATGCTGCTGTAAGACAAGCTAATTGGGGTGCTTCAAAAGTGCGAGACAAACTTCACCGTGATATTGATTCACATACTTCATCCATGCGCAGTACAAAACTGTCGGAGATAACAGCTAATTTTGAGAAAAAATTGGCCAAGGCGTTGACAGAGCCTGTGGAGTCTCTCTTTGAAGCAGGTGGAAAGGACACCTGGCTTTCAATAAGAGAGCTACTTAAACGTGAGACTGAAATTGCTGTATCAGAATTTTCTGCTTCTGTTGCTGGTTTTGAGCTGGATGAAGAAACAGTTGAAAGAATGCAACAAAGCTTAAGGGACTATGCAAGAAAAGTGGTGGAAAATAAAGCAAGAGATGAAGCTGGAAAGATTCTGATACGCATGAAAGATAGGTTCTCTACTGTTTTCAATCATGATAATGATTCACTACCTAGAGTTTGGACTGGGAAGGAAGATGTCAGAGCTATTACAAGGGATGCTCGCTCTGCGTCGCTGAAGCTTCTATCAGATATGGCTGCTATACGCTTGGATGAGAAGCCAGATCGCATTGAAAGTGCACTTCATTCATCTCTCATAGATAAAACTAGTGCTGCAACATCTTCTCAATATCTAACTAGGGAAGCTTCTGTAGATCCATTGGCTTCAAGCACATGGGAGGAGAAGATGTGCTTATCACTCCAGTGCAGTGCAAAGCTTTGTGGAGACAATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAGGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGTTGCTACTAAAAAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAACCTTATTAAACGTCTTGCTGAAGAAGCTCAGGGGAATCAAACCCCTCAAGAATCACAAGGGTCAGCTTCTCAGACACAGATCTTCAGAAATCAAGTGCACAAACCAGATTCAGTATCAACCTCAATTTCCAATGTATCGAGTGTTGGCTTGTCTGTTGATGATAACGAATACTCAACCACAAACTTGTCTCAGAGGCGAAGAACAAACGCTCCCGAAGCTGAATTTTCATGACAAAATTCATGACAATTTGATTTGAAGACGGTTGGCATCAGATTAGACATGCACCAGTTAGGGTGACTTCCCAGATCAGTTTTGTATTATTACTCCCTATCTATATTTTACATCAATATTTTACTTTTCTTCTTTACCGTAACGTGTAAATTATCTGAGTATATGAAGGACCCCTATTTGGGTTCTATAACTACAGAACATATCTCAGTCCAATAGTGACGGAATAACAATATTATAAACTAGTTTCGCTTTATGATCACATGAAATTGACGATCGTCGTTGCTGAAAATTCATTGTACAAAAGAAATTGAACTAGTTAGATTTATTCTTAAAAGTTTATTACAATCCCGTTGTATTAGAAATTGTCACATCTATTTGAACCTTCACCTA
>Glyma15g13380.1 sequence type=CDS gene model=Glyma15g13380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAACGACGATTGCTGCGCCACGCAACTCATCGACGGCGACGGCGAGTTCAACGTCGCCGGCCTCGACAACTTTATCAGAACCGTCAATCTCGCCTCCTGCGGCCTCTCCTATGCCGTCGTCGCAATCATGGGACCTCAGAGTAGCGGGAAGAGCACGTTAATGAATCATCTTTTCCACACAAGTTTCAGGGAGATGGATGCTTTCAGGGGAAGATCGCAAACGACCAAGGGCATTTGGATAGCCAAGTGTGTTGGGATTGAGCCAAGCACAATTGCTATGGATTTAGAGGGTACTGATGGAAGAGAGAGAGGCGAGGATGACACTGCTTTCGAGAAACAGAGTGCTCTTTTTGCTTTGGCAATATCAGATATTGTTCTGATAAACATGTGGTGTCATGATATTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAGGTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATACGTGATAAAACAAAGACCCCACTTGAAAATTTGGAGCCTATTCTAAGAGAAGATATTCAGAAGATTTGGGATGGCGTTCGAAAACCCCAAGCCCATCTACATACTCCTCTTAGTGAATTTTTTAATGTGGAGGTTACTGCTTTGTCAAGCTATGAGGACAAGGAGGACAAGTTCAAAGAGGAGGTTGCTCAATTACGGCAGCGTTTCTTCCATTCTATAGCGCCTGGAGGTCTGGCTGGTGATCGGCGTGGTGTTGTGCCTGCTTCTGCCTTTTCTATTAGTGCACAACAAATATGGAAAGTCATTCGGGAAAACAAGGATCTCGATCTTCCAGCTCATAAGGTAATGGTTGCAACAGTGCGTTGTGAAGAGATTGCTAATGAAAAACTTAACCGACTACGCTCTGACAAGGGTTGGTTGGAATTGGAGGAAGCTATTGAATTGGGTCCTGTACGAGGTTTTGGGGAAAAGCTGAGCTCCATTATTGATGCCTGCCTTTCACAATATGATGAGGAGGCAATCTTCTTTGATGAAGCTGTGAGAAATGCAAAACGAAAGCAATTGGAATCAAAGGCTTTGGATCTTGTGTACCCTGCTTATACAACATTGTTAGGGCATATACGCTCTAAAGCTCTAGATGATTTTAAGACTAAGCTGGAACAATCACTAAACAATGGAGAAGGGTTTGCTTCATCTGTTCGCACTTGGACTCAGTCTACTATGCTTCAGTTTGACAAAGCATCTGCTGATGCTGCTGTAAGACAAGCTAATTGGGGTGCTTCAAAAGTGCGAGACAAACTTCACCGTGATATTGATTCACATACTTCATCCATGCGCAGTACAAAACTGTCGGAGATAACAGCTAATTTTGAGAAAAAATTGGCCAAGGCGTTGACAGAGCCTGTGGAGTCTCTCTTTGAAGCAGGTGGAAAGGACACCTGGCTTTCAATAAGAGAGCTACTTAAACGTGAGACTGAAATTGCTGTATCAGAATTTTCTGCTTCTGTTGCTGGTTTTGAGCTGGATGAAGAAACAGTTGAAAGAATGCAACAAAGCTTAAGGGACTATGCAAGAAAAGTGGTGGAAAATAAAGCAAGAGATGAAGCTGGAAAGATTCTGATACGCATGAAAGATAGGTTCTCTACTGTTTTCAATCATGATAATGATTCACTACCTAGAGTTTGGACTGGGAAGGAAGATGTCAGAGCTATTACAAGGGATGCTCGCTCTGCGTCGCTGAAGCTTCTATCAGATATGGCTGCTATACGCTTGGATGAGAAGCCAGATCGCATTGAAAGTGCACTTCATTCATCTCTCATAGATAAAACTAGTGCTGCAACATCTTCTCAATATCTAACTAGGGAAGCTTCTGTAGATCCATTGGCTTCAAGCACATGGGAGGAGGTTTCCCCAGAAGATGTGCTTATCACTCCAGTGCAGTGCAAAGCTTTGTGGAGACAATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAGGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGTTGCTACTAAAAAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACTCTGCCTGGACTACTATCCATTTCATCAAAGTTTCTTCCCACATTTATGAACCTTATTAAACGTCTTGCTGAAGAAGCTCAGGGGAATCAAACCCCTCAAGAATCACAAGGGTCAGCTTCTCAGACACAGATCTTCAGAAATCAAGTGCACAAACCAGATTCAGTATCAACCTCAATTTCCAATGTATCGAGTGTTGGCTTGTCTGTTGATGATAACGAATACTCAACCACAAACTTGTCTCAGAGGCGAAGAACAAACGCTCCCGAAGCTGAATTTTCATGA >Glyma15g13380.2 sequence type=CDS gene model=Glyma15g13380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAACGACGATTGCTGCGCCACGCAACTCATCGACGGCGACGGCGAGTTCAACGTCGCCGGCCTCGACAACTTTATCAGAACCGTCAATCTCGCCTCCTGCGGCCTCTCCTATGCCGTCGTCGCAATCATGGGACCTCAGAGTAGCGGGAAGAGCACGTTAATGAATCATCTTTTCCACACAAGTTTCAGGGAGATGGATGCTTTCAGGGGAAGATCGCAAACGACCAAGGGCATTTGGATAGCCAAGTGTGTTGGGATTGAGCCAAGCACAATTGCTATGGATTTAGAGGGTACTGATGGAAGAGAGAGAGGCGAGGATGACACTGCTTTCGAGAAACAGAGTGCTCTTTTTGCTTTGGCAATATCAGATATTGTTCTGATAAACATGTGGTGTCATGATATTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAAAACAGTTTTTCAGGTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATACGTGATAAAACAAAGACCCCACTTGAAAATTTGGAGCCTATTCTAAGAGAAGATATTCAGAAGATTTGGGATGGCGTTCGAAAACCCCAAGCCCATCTACATACTCCTCTTAGTGAATTTTTTAATGTGGAGGTTACTGCTTTGTCAAGCTATGAGGACAAGGAGGACAAGTTCAAAGAGGAGGTTGCTCAATTACGGCAGCGTTTCTTCCATTCTATAGCGCCTGGAGGTCTGGCTGGTGATCGGCGTGGTGTTGTGCCTGCTTCTGCCTTTTCTATTAGTGCACAACAAATATGGAAAGTCATTCGGGAAAACAAGGATCTCGATCTTCCAGCTCATAAGGTAATGGTTGCAACAGTGCGTTGTGAAGAGATTGCTAATGAAAAACTTAACCGACTACGCTCTGACAAGGGTTGGTTGGAATTGGAGGAAGCTATTGAATTGGGTCCTGTACGAGGTTTTGGGGAAAAGCTGAGCTCCATTATTGATGCCTGCCTTTCACAATATGATGAGGAGGCAATCTTCTTTGATGAAGCTGTGAGAAATGCAAAACGAAAGCAATTGGAATCAAAGGCTTTGGATCTTGTGTACCCTGCTTATACAACATTGTTAGGGCATATACGCTCTAAAGCTCTAGATGATTTTAAGACTAAGCTGGAACAATCACTAAACAATGGAGAAGGGTTTGCTTCATCTGTTCGCACTTGGACTCAGTCTACTATGCTTCAGTTTGACAAAGCATCTGCTGATGCTGCTGTAAGACAAGCTAATTGGGGTGCTTCAAAAGTGCGAGACAAACTTCACCGTGATATTGATTCACATACTTCATCCATGCGCAGTACAAAACTGTCGGAGATAACAGCTAATTTTGAGAAAAAATTGGCCAAGGCGTTGACAGAGCCTGTGGAGTCTCTCTTTGAAGCAGGTGGAAAGGACACCTGGCTTTCAATAAGAGAGCTACTTAAACGTGAGACTGAAATTGCTGTATCAGAATTTTCTGCTTCTGTTGCTGGTTTTGAGCTGGATGAAGAAACAGTTGAAAGAATGCAACAAAGCTTAAGGGACTATGCAAGAAAAGTGGTGGAAAATAAAGCAAGAGATGAAGCTGGAAAGATTCTGATACGCATGAAAGATAGGTTCTCTACTGTTTTCAATCATGATAATGATTCACTACCTAGAGTTTGGACTGGGAAGGAAGATGTCAGAGCTATTACAAGGGATGCTCGCTCTGCGTCGCTGAAGCTTCTATCAGATATGGCTGCTATACGCTTGGATGAGAAGCCAGATCGCATTGAAAGTGCACTTCATTCATCTCTCATAGATAAAACTAGTGCTGCAACATCTTCTCAATATCTAACTAGGGAAGCTTCTGTAGATCCATTGGCTTCAAGCACATGGGAGGAGAAGATGTGCTTATCACTCCAGTGCAGTGCAAAGCTTTGTGGAGACAATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAGGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAA
>Glyma15g13380.1 sequence type=predicted peptide gene model=Glyma15g13380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MANDDCCATQLIDGDGEFNVAGLDNFIRTVNLASCGLSYAVVAIMGPQSSGKSTLMNHLFHTSFREMDAFRGRSQTTKGIWIAKCVGIEPSTIAMDLEGTDGRERGEDDTAFEKQSALFALAISDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLENLEPILREDIQKIWDGVRKPQAHLHTPLSEFFNVEVTALSSYEDKEDKFKEEVAQLRQRFFHSIAPGGLAGDRRGVVPASAFSISAQQIWKVIRENKDLDLPAHKVMVATVRCEEIANEKLNRLRSDKGWLELEEAIELGPVRGFGEKLSSIIDACLSQYDEEAIFFDEAVRNAKRKQLESKALDLVYPAYTTLLGHIRSKALDDFKTKLEQSLNNGEGFASSVRTWTQSTMLQFDKASADAAVRQANWGASKVRDKLHRDIDSHTSSMRSTKLSEITANFEKKLAKALTEPVESLFEAGGKDTWLSIRELLKRETEIAVSEFSASVAGFELDEETVERMQQSLRDYARKVVENKARDEAGKILIRMKDRFSTVFNHDNDSLPRVWTGKEDVRAITRDARSASLKLLSDMAAIRLDEKPDRIESALHSSLIDKTSAATSSQYLTREASVDPLASSTWEEVSPEDVLITPVQCKALWRQFQGETEYTVTQAISAQEAYKRSNNWLPPPWAIMAMVILGFNEFMLLLKNPLYLMFIFVAYLLGKAIWVQMDIAGEFRHGTLPGLLSISSKFLPTFMNLIKRLAEEAQGNQTPQESQGSASQTQIFRNQVHKPDSVSTSISNVSSVGLSVDDNEYSTTNLSQRRRTNAPEAEFS* >Glyma15g13380.2 sequence type=predicted peptide gene model=Glyma15g13380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MANDDCCATQLIDGDGEFNVAGLDNFIRTVNLASCGLSYAVVAIMGPQSSGKSTLMNHLFHTSFREMDAFRGRSQTTKGIWIAKCVGIEPSTIAMDLEGTDGRERGEDDTAFEKQSALFALAISDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLENLEPILREDIQKIWDGVRKPQAHLHTPLSEFFNVEVTALSSYEDKEDKFKEEVAQLRQRFFHSIAPGGLAGDRRGVVPASAFSISAQQIWKVIRENKDLDLPAHKVMVATVRCEEIANEKLNRLRSDKGWLELEEAIELGPVRGFGEKLSSIIDACLSQYDEEAIFFDEAVRNAKRKQLESKALDLVYPAYTTLLGHIRSKALDDFKTKLEQSLNNGEGFASSVRTWTQSTMLQFDKASADAAVRQANWGASKVRDKLHRDIDSHTSSMRSTKLSEITANFEKKLAKALTEPVESLFEAGGKDTWLSIRELLKRETEIAVSEFSASVAGFELDEETVERMQQSLRDYARKVVENKARDEAGKILIRMKDRFSTVFNHDNDSLPRVWTGKEDVRAITRDARSASLKLLSDMAAIRLDEKPDRIESALHSSLIDKTSAATSSQYLTREASVDPLASSTWEEKMCLSLQCSAKLCGDNFREKLSIQLLKLFQLRRPTSGVTIGYLLHGQ*
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