Glyma15g13240 - SoyBase

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Report for Sequence Feature Glyma15g13240

Feature Type:	gene_model
Chromosome:	Gm15
Start:	9873037
stop:	9879047
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g13240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G19670	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr4:10699383-10701342 REVERSE LENGTH=532	SoyBase	E_val: 0	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1812	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR11685	Panther	ARIADNE RING ZINC FINGER	JGI		ISS
PTHR11685:SF18	Panther	UNCHARACTERIZED	JGI		ISS
PF01485	PFAM	IBR domain	JGI		ISS
UniRef100_G7IFV6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase RNF216 n=1 Tax=Medicago truncatula RepID=G7IFV6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L0B2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L0B2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g13240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g13240

Paralog	Evidence	Comments
Glyma09g02340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g13240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g126500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g13240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g13240

Limit To All Plant Sequences

>Glyma15g13240.2   sequence type=CDS   gene model=Glyma15g13240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGATCAGGGTGTTTTAGGTGTTAATGTTGGGAGAGAGGAAGAGGAAGATGAGTTTTGCAGTTGTTGTGGAGATGAAGATGAAGAAGCGTGGAAAGAGACCGAGGAAATTGTAGTCGAAGGGTTGAAGGATGAGCTTGATGAATTTTCAGTGAAGATGTTCTTCAAGGGGTTGTCAATGGCTGGTGTTGAAAATTCAAGTTCTGGGTTTTCTGGGATTGGAGTGTTCATGGAAAGGTCTTCAGGTTTTCCTGCTATAAGGGTGCAGAAAAAGCTTGACTTTTATGCGGAGGAATCAATGGTTGACTATTTGGCACTCTTGGATGGGTTGCTGGAAGCTACCCAGAACAAGATCCGCAGGGTTTTTGCTTTCACTGATTCTGAGTTGTTGCACGACCAGATAACATTTGGGAAAAAATTGGAGATGCCTCTTTTGACCGCACTGAGAGAAAGGATTCTGGAACTTGCCAACAATTTTGAAGATTTTGTTTTAAACCTTATACCCTCTACTGATCTTGAGCAGCCACTGCATTTGGCCAAAGTAGCTATTGGACTTGTCACTTTCCCTGTAAATGGTGAGATATTGCTTAAGAACTGTTCTATTTGCTGTGATGACAAGCCAGTGCCAATTATGATTACCTTGAAATGTTTGCACACATTCTGTTCACATTGCTTGAGGGCCTATGCTGATGGTAAAGTACAATCTTGTCAATTCCCTATAAGATGCCCTCAACCAAGATGCAAGTATTGCATGTCTGTAACTGAGTGCAGGTCTTTTCTTCCATTCATCTCCTTTGGATCACTGGAGAAAGCCCTTTCCGAAGAAAATATTGACCATTCAGATAGAATTTATTGTCCATTTCCAAATTGCTCTGTTCTCCTTGATCCTCATGAATGTTCATCAGCAAGGGCCAGTTCATCTAGTCAGTCTGACAACTCTTGTATCGAGTGTCCTGTTTGTCGGAGGTTTATCTGTGTGGACTGTAAGGTTCCTTGGCATTCTTCTATGAGTTGTTTAGAATACCAGAACCTGCCAGAGAAGGAGAGGGATGTTTCTGACATTACCTTGCATCGTCTTGCTCAGAATAAAAGGTGGAAGCGCTGTCAGCAGTGTCGTAGAATGATTGAGCTTACTCAAGGCTGTTACCACATGACATGCTGGTGTGGTTATGAGTTTTGCTATTCATGTGGTGCGGAATACCGAGAAGGGCAACAGACATGCCAGTGTGCATATTGGGATGAAGATAACTCTGAAGACTCAGTGGCGCACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACATTCAATTCTCTCTCCATGATCGTGGACGCATACTCAGACCAAGAACGATCGCAGCTTGCACTTATTCAAAGGTTCCTAGCTGGGGGTTTCAGTCTCAGTGACCATAATCCTTACCAATCTCCTCCTCGCTGTACAGACTCCTATGTAGACCCCATGAAGGATCTACATCAACTTCCATGGCTAGAGAGATTTGTGTCTGTGATAAGTGACAACTACTATGATGATTACATTCAATGA

Predicted protein sequences of Glyma15g13240

Limit To All Plant Sequences

>Glyma15g13240.2   sequence type=predicted peptide   gene model=Glyma15g13240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDQGVLGVNVGREEEEDEFCSCCGDEDEEAWKETEEIVVEGLKDELDEFSVKMFFKGLSMAGVENSSSGFSGIGVFMERSSGFPAIRVQKKLDFYAEESMVDYLALLDGLLEATQNKIRRVFAFTDSELLHDQITFGKKLEMPLLTALRERILELANNFEDFVLNLIPSTDLEQPLHLAKVAIGLVTFPVNGEILLKNCSICCDDKPVPIMITLKCLHTFCSHCLRAYADGKVQSCQFPIRCPQPRCKYCMSVTECRSFLPFISFGSLEKALSEENIDHSDRIYCPFPNCSVLLDPHECSSARASSSSQSDNSCIECPVCRRFICVDCKVPWHSSMSCLEYQNLPEKERDVSDITLHRLAQNKRWKRCQQCRRMIELTQGCYHMTCWCGYEFCYSCGAEYREGQQTCQCAYWDEDNSEDSVAHSLQESEQWAWETFNSLSMIVDAYSDQERSQLALIQRFLAGGFSLSDHNPYQSPPRCTDSYVDPMKDLHQLPWLERFVSVISDNYYDDYIQ*

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