Glyma15g13190 - SoyBase

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Report for Sequence Feature Glyma15g13190

Feature Type:	gene_model
Chromosome:	Gm15
Start:	9813238
stop:	9815973
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g13190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09800	AT	Annotation by Michelle Graham. TAIR10: SNARE-like superfamily protein \| chr3:3006731-3007916 REVERSE LENGTH=179	SoyBase	E_val: 1.00E-95	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0030125	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: clathrin vesicle coat	SoyBase	N/A	ISS
KOG3343	KOG	Vesicle coat complex COPI, zeta subunit	JGI		ISS
PTHR11043	Panther	ZETA-COAT PROTEIN	JGI		ISS
PF01217	PFAM	Clathrin adaptor complex small chain	JGI		ISS
UniRef100_Q9MAZ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Nonclathrin coat protein zeta2-COP n=1 Tax=Glycine max RepID=Q9MAZ1_SOYBN	SoyBase	E_val: 5.00E-127	ISS
UniRef100_Q9MAZ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nonclathrin coat protein zeta2-COP n=1 Tax=Glycine max RepID=Q9MAZ1_SOYBN	SoyBase	E_val: 5.00E-127	ISS

Expression Patterns of Glyma15g13190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g13190 not represented in the dataset	Glyma15g13190 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g13190

Paralog	Evidence	Comments
Glyma09g02270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g13190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g125800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g13190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g13190

Limit To All Plant Sequences

>Glyma15g13190.2   sequence type=transcript   gene model=Glyma15g13190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCAAGGGATGCTTGAGTTGACAGAAGTTGAAAATTTTGGTTGAGTGAGAGGCTTGTCTTTGTTCCGCTACCATGTCTCATGAGACATGCCCTTCTGTAAAGAATGTCCTTCTTTTGGATTCCGATGGGAAACGTGTTGCGGTCAAATACTTCTCTGAAGACTGGCCGACAAATAGTGCCAAGGAAAATTTTGAGAAAGTTGTATTCAACAAGACTCAGAAAACCAATGCCCGCACGGAAGCAGAAATAGCAATGTTTGAGAATAACATTGTTCTTTACAAGTTTGTCCAAGATCTTCACTTCTTTGTTACCGGTGGTGATTATGAAAATGAGCTTATCTTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATTGTGCATTGATGAAATTGTTGATGGCGGGTATGCTATATGCTATTCATATGAAATTTATCTCCTTCAGTTGTGTGTTTGTTTGCTTCTCTAAATCTTCTCATGCACTTCCCTCTTCCTCCAATACAAATTGTAGCAGCTATTTGATATATCAGAGATCAACTCTTTTCTGCAGTTAAATTATTGGAATTGTACAACTTTTTGTCATAAAAACAAAATCCTTCTCTGAACCGTTATTCTGCTAGGAAGGTACTTGAATACCAGAGTTTGGAGCTTTCTAAGTTTATGATACTCTTGAATTCTATAAACACTCAAATGCTCAAGTAACTAATGGGCTTACATCAGTTTTTGATAGTTCAGGGGTAATTCTGTTCCATTGCCCTTATCTGTTGTGATCAATGAGATGTAACAAATGTCGCTTGCACAACAACACAAGTCCTTTTCAGTGTGTACAGCCAGAGTAGAATTTGAATACATATGATGTTTCTGCTGAGTTTTTCACACGATGACATCTATTTTTTCAGTTCTTTTCATTGTTAAGCCAACCACATGGCACATACTGTTTCAGAAATCATGGCTTAATCTTAAAAGGCACGACTTAAATCTTGGATGCAATTAATTGAGTTGCTAATCCTTAAATGTTATTGTACCTTGTTGCTGTAGCTGCCTGTGATTTCAGTAGTTATAGATCCCATAGTACTGGAATGTCAGTAGAATTATACCATAAATCACATTTATCTAGGAAAGGCATACCCCTCTGATCTTCCTCCTTTTGTATGCCTTCTCCCTCATTATCACCTCAACACTTACTCCTTTTCTTCTTGCATCTTATCTACCTTTGTCTTGACTCCACGCCGGTTTCACATAAACTTCATGTCTTCATATTTTGTGCAGTATCATACTTGAAACTGATCCAAATGTTATAGCTGGGAAAGTTGCTAGTAATAGTATAGATTCTGGAGCTCCTTTGTCCGAACAGACACTAAGTCAAGCATTGGCCACAGCCAGGGAACATCTTGCAAGGTCCCTTCTTAAATGATTCATATGGCATTTCACAATGACGGAGGAAACTTGTCTTTAGGTTTTTCCTATAAACGTTTATAAGAAAGAACCTCATTGCATTCTCGAGAAGTCGAACCTGGATGTTGATGTTACTTGCGTAGTGAAAGTTAATATTGACATGCTAATACAGGCTATTCTAGCAGTACTTTTCTTCTGGCGATTTGTTATTTTAGTTACCTATTAAATTTCAGGATGGTGGCATATTCCGTATGTTCCAAAAATTTCATAGGAATCAATTTTAGTGCATACTAATTCTAAACTCTTATGTTACCCCCCCCATCTTTGAGTTTTGCAAGCATACAACTCTCCCTCTATGTAAGTTTAAATTAATGAACGGAACTATCCAAATCATCGTC

>Glyma15g13190.3   sequence type=transcript   gene model=Glyma15g13190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCAAGGGATGCTTGAGTTGACAGAAGTTGAAAATTTTGGTTGAGTGAGAGGCTTGTCTTTGTTCCGCTACCATGTCTCATGAGACATGCCCTTCTGTAAAGAATGTCCTTCTTTTGGATTCCGATGGGAAACGTGTTGCGGTCAAATACTTCTCTGAAGACTGGCCGACAAATAGTGCCAAGGAAAATTTTGAGAAAGTTGTATTCAACAAGACTCAGAAAACCAATGCCCGCACGGAAGAAATAGCAATGTTTGAGAATAACATTGTTCTTTACAAGTTTGTCCAAGATCTTCACTTCTTTGTTACCGGTGGTGATTATGAAAATGAGCTTATCTTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATTGTGCATTGATGAAATTGTTGATGGCGGTATCATACTTGAAACTGATCCAAATGTTATAGCTGGGAAAGTTGCTAGTAATAGTATAGATTCTGGAGCTCCTTTGTCCGAACAGACACTAAGTCAAGCATTGGCCACAGCCAGGGAACATCTTGCAAGGTCCCTTCTTAAATGATTCATATGGCATTTCACAATGACGGAGGAAACTTGTCTTTAGGTTTTTCCTATAAACGTTTATAAGAAAGAACCTCATTGCATTCTCGAGAAGTCGAACCTGGATGTTGATGTTACTTGCGTAGTGAAAGTTAATATTGACATGCTAATACAGGCTATTCTAGCAGTACTTTTCTTCTGGCGATTTGTTATTTTAGTTACCTATTAAATTTCAGGATGGTGGCATATTCCGTATGTTCCAAAAATTTCATAGGAATCAATTTTAGTGCATACTAATTCTAAACTCTTATGTTACCCCCCCCATCTTTGAGTTTTGCAAGCATACAACTCTCCCTCTATGTAAGTTTAAATTAATGAACGGAACTATCCAAATCATCGTC

Coding sequences of Glyma15g13190

Limit To All Plant Sequences

>Glyma15g13190.1   sequence type=CDS   gene model=Glyma15g13190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCATGAGACATGCCCTTCTGTAAAGAATGTCCTTCTTTTGGATTCCGATGGGAAACGTGTTGCGGTCAAATACTTCTCTGAAGACTGGCCGACAAATAGTGCCAAGGAAAATTTTGAGAAAGTTGTATTCAACAAGACTCAGAAAACCAATGCCCGCACGGAAGCAGAAATAGCAATGTTTGAGAATAACATTGTTCTTTACAAGTTTGTCCAAGATCTTCACTTCTTTGTTACCGGTGGTGATTATGAAAATGAGCTTATCTTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATTGTGCATTGATGAAATTGTTGATGGCGGTATCATACTTGAAACTGATCCAAATGTTATAGCTGGGAAAGTTGCTAGTAATAGTATAGATTCTGGAGCTCCTTTGTCCGAACAGACACTAAGTCAAGCATTGGCCACAGCCAGGGAACATCTTGCAAGGTCCCTTCTTAAATGA

>Glyma15g13190.2   sequence type=CDS   gene model=Glyma15g13190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCATGAGACATGCCCTTCTGTAAAGAATGTCCTTCTTTTGGATTCCGATGGGAAACGTGTTGCGGTCAAATACTTCTCTGAAGACTGGCCGACAAATAGTGCCAAGGAAAATTTTGAGAAAGTTGTATTCAACAAGACTCAGAAAACCAATGCCCGCACGGAAGCAGAAATAGCAATGTTTGAGAATAACATTGTTCTTTACAAGTTTGTCCAAGATCTTCACTTCTTTGTTACCGGTGGTGATTATGAAAATGAGCTTATCTTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATTGTGCATTGATGAAATTGTTGATGGCGGGTATGCTATATGCTATTCATATGAAATTTATCTCCTTCAGTTGTGTGTTTGTTTGCTTCTCTAA

>Glyma15g13190.3   sequence type=CDS   gene model=Glyma15g13190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCATGAGACATGCCCTTCTGTAAAGAATGTCCTTCTTTTGGATTCCGATGGGAAACGTGTTGCGGTCAAATACTTCTCTGAAGACTGGCCGACAAATAGTGCCAAGGAAAATTTTGAGAAAGTTGTATTCAACAAGACTCAGAAAACCAATGCCCGCACGGAAGAAATAGCAATGTTTGAGAATAACATTGTTCTTTACAAGTTTGTCCAAGATCTTCACTTCTTTGTTACCGGTGGTGATTATGAAAATGAGCTTATCTTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATTGTGCATTGATGAAATTGTTGATGGCGGTATCATACTTGAAACTGATCCAAATGTTATAGCTGGGAAAGTTGCTAGTAATAGTATAGATTCTGGAGCTCCTTTGTCCGAACAGACACTAAGTCAAGCATTGGCCACAGCCAGGGAACATCTTGCAAGGTCCCTTCTTAAATGA

Predicted protein sequences of Glyma15g13190

Limit To All Plant Sequences

>Glyma15g13190.1   sequence type=predicted peptide   gene model=Glyma15g13190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSHETCPSVKNVLLLDSDGKRVAVKYFSEDWPTNSAKENFEKVVFNKTQKTNARTEAEIAMFENNIVLYKFVQDLHFFVTGGDYENELILATVLQAFFDSVGLLLRGNVDKKEALENLDLILLCIDEIVDGGIILETDPNVIAGKVASNSIDSGAPLSEQTLSQALATAREHLARSLLK*

>Glyma15g13190.2   sequence type=predicted peptide   gene model=Glyma15g13190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSHETCPSVKNVLLLDSDGKRVAVKYFSEDWPTNSAKENFEKVVFNKTQKTNARTEAEIAMFENNIVLYKFVQDLHFFVTGGDYENELILATVLQAFFDSVGLLLRGNVDKKEALENLDLILLCIDEIVDGGYAICYSYEIYLLQLCVCLLL*

>Glyma15g13190.3   sequence type=predicted peptide   gene model=Glyma15g13190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSHETCPSVKNVLLLDSDGKRVAVKYFSEDWPTNSAKENFEKVVFNKTQKTNARTEEIAMFENNIVLYKFVQDLHFFVTGGDYENELILATVLQAFFDSVGLLLRGNVDKKEALENLDLILLCIDEIVDGGIILETDPNVIAGKVASNSIDSGAPLSEQTLSQALATAREHLARSLLK*

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