Glyma15g13020 - SoyBase

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Report for Sequence Feature Glyma15g13020

Feature Type:	gene_model
Chromosome:	Gm15
Start:	9691358
stop:	9695609
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g13020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G44190	AT	Annotation by Michelle Graham. TAIR10: Family of unknown function (DUF566) \| chr2:18272346-18274332 FORWARD LENGTH=474	SoyBase	E_val: 1.00E-66	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000280	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear division	SoyBase	N/A	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0006342	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing	SoyBase	N/A	ISS
GO:0007000	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleolus organization	SoyBase	N/A	ISS
GO:0009960	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosperm development	SoyBase	N/A	ISS
GO:0009965	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis	SoyBase	N/A	ISS
GO:0010342	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosperm cellularization	SoyBase	N/A	ISS
GO:0016572	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone phosphorylation	SoyBase	N/A	ISS
GO:0048316	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed development	SoyBase	N/A	ISS
GO:0048451	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal formation	SoyBase	N/A	ISS
GO:0048453	GO-bp	Annotation by Michelle Graham. GO Biological Process: sepal formation	SoyBase	N/A	ISS
GO:0051225	GO-bp	Annotation by Michelle Graham. GO Biological Process: spindle assembly	SoyBase	N/A	ISS
GO:0051301	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell division	SoyBase	N/A	ISS
GO:0051322	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaphase	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005880	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear microtubule	SoyBase	N/A	ISS
GO:0008017	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule binding	SoyBase	N/A	ISS
PF04484	PFAM	Family of unknown function (DUF566)	JGI		ISS
UniRef100_I1L085	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L085_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LJN9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Emb\|CAB52444.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LJN9_ARATH	SoyBase	E_val: 1.00E-38	ISS

Expression Patterns of Glyma15g13020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g13020 not represented in the dataset	Glyma15g13020 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g13020

Paralog	Evidence	Comments
Glyma09g02120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g13020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g124000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g13020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g13020

Limit To All Plant Sequences

>Glyma15g13020.2   sequence type=CDS   gene model=Glyma15g13020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCAGGTGCAGGTCCAGATCATGCCGGAACACAATTCCGATCCCGCCGCCCCTCCGCCTCCTCCTCCGCCGCCGCACAACCGCCGGCCGAGGGTCCGAGAGGTCAGCTCCCGGTTCATGTCCCCATCCGTGCCGCGCCGCCCGCGGACGACGGAGCCGGACCCCGATGAGAATTCCGAAACCCCGTTCCCACTTGGGTGTTCTATTTCTCAGAGAAAACAAACACAAACACCACAACAACAACGTTCGATGAAGCTTTTCAAAGAGAACAACAACAACGAGCATGTTCCACCGCACCCTCACCCTTCAAAGTCATGTTCTGGAAGAATTGGTACGCCTTGTGTTTCTAGGCCTGGCACTCCCACTCCCTCGGTTTACGTGTCTTCTAGGTATAGACAAACACAACAACACCATCATCATCATAATAATAATCACCATCATCATAGATTTGTTAATGGCATGGCCTCTGCTGCTGAAAAATTAATGCAAGCCAGTGGATTGAATCAGGCTAAGTCCAGTGCTGCTTGCTCCAGTGATAATTCTGGAGTGAATTGTAGTATTCAGTCACTTCCTGAATTGGGGGAGAGAGAGATGTTGCTGCAATCCAATTTGTCTGCGGGTGAGAAAATTGGGAGTGGCAATGGTGGTGGTGGGGACTTGAAGTTTCGCCACCCTTCGCCTTTGTCGCGGTCGGTTACTTTGCCTTCTTCGGGGGGTGAGAACAAACCTCCGGCTTCTGTCTCCAAGCAGCATGGGAGTGGTAATCAGTTGGCTAAGTCAGGGGGGCTTAGTTTGCCGCCGGTACCTCCTCAGTGTGGAAAGCCAGCAGTGGATGTGAGGAAAGGGAAGAAAGGATCTAGTCATCAGGAAGATGTGCATTCTCTTAGATTGTTGTATAATCGATATTTGCAATGGAGATTCGCCAATGCAAAAGCGCACTCCGTGATGAAAGCTCAGCAAACAGAAAGCCAGAAAGCACTATATTCTCAAGCAATGAGAATATCAGAAATGCGTGATTCTGTGAACAAGAAACGCATAGAGCTGGAGCTTTTGCGGAGATCAAAGACTCTGTCAACAATTCTTGAAGCTCAAATTCCATATCTAGATGAGTGGTCTACAATGATGGAAGAATATTCAGTCTCTATTACGGAAGCAATTCAGGCTTTAGTGAATGCCTCAGAGCGACTTCCAGTTGGTGGGAATGTTAGGGTTGATGTAAGACAACTGGGGGAGGCACTGAATTCAGCATCGAAGATGATGGAAACAATGATTTCCAATATACAAAGATTCATGCCAAAGGCAGAAGAAACAGACGTTTCCATTTCAGAATTAGCCAGAGTTGCTGGTGGGGAAAGAGCTCTTGTTGGAGAATGTGGAGATTTATTATCAAAGACATACAAATCACAGTTGGAGGAGTGCAGCTTAAGGGGTCAGCTAATCCAACTGCATTCAGTTCGCGACAAGAATAAGAATGAAGAATAA

Predicted protein sequences of Glyma15g13020

Limit To All Plant Sequences

>Glyma15g13020.2   sequence type=predicted peptide   gene model=Glyma15g13020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVQVQVQIMPEHNSDPAAPPPPPPPPHNRRPRVREVSSRFMSPSVPRRPRTTEPDPDENSETPFPLGCSISQRKQTQTPQQQRSMKLFKENNNNEHVPPHPHPSKSCSGRIGTPCVSRPGTPTPSVYVSSRYRQTQQHHHHHNNNHHHHRFVNGMASAAEKLMQASGLNQAKSSAACSSDNSGVNCSIQSLPELGEREMLLQSNLSAGEKIGSGNGGGGDLKFRHPSPLSRSVTLPSSGGENKPPASVSKQHGSGNQLAKSGGLSLPPVPPQCGKPAVDVRKGKKGSSHQEDVHSLRLLYNRYLQWRFANAKAHSVMKAQQTESQKALYSQAMRISEMRDSVNKKRIELELLRRSKTLSTILEAQIPYLDEWSTMMEEYSVSITEAIQALVNASERLPVGGNVRVDVRQLGEALNSASKMMETMISNIQRFMPKAEETDVSISELARVAGGERALVGECGDLLSKTYKSQLEECSLRGQLIQLHSVRDKNKNEE*

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