Glyma15g12930 - SoyBase

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Report for Sequence Feature Glyma15g12930

Feature Type:	gene_model
Chromosome:	Gm15
Start:	9622982
stop:	9626519
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g12930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G24120	AT	Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein \| chr3:8705925-8708148 REVERSE LENGTH=295	SoyBase	E_val: 2.00E-63	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0010048	GO-bp	Annotation by Michelle Graham. GO Biological Process: vernalization response	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_C6T856	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6T856_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7ISN7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Myb family transcription factor n=1 Tax=Medicago truncatula RepID=G7ISN7_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g12930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g12930

Paralog	Evidence	Comments
Glyma09g02030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g12930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g123000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g12930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g12930

Limit To All Plant Sequences

>Glyma15g12930.2   sequence type=transcript   gene model=Glyma15g12930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAATAATAGACATAGACATAGACATGTAGGTATTAGAGTGCCCACAGACAATAACCCCTTAAAAAAAAACTCGGTCTCTATTTTTTTCCTTTTCTTTTCTTTCTCTCTCAAATTTCTTTCCCTTCTGTTCACTCAAAAGAGCAGAAAGAGACAAGATCCCGGAAAGGCGTGCCGGCGTCAGAGACTCATCAGTTCTCACTCGTACGGCGTTGTGCTTTGCTTTCTCACCTTCTTCTTCATTTCTTTCATCATCATCATCATCTCAATATAAAGTTCGCTCCTTTCTCAGTTTTCACCCATACCCAGATGGGTAACAGCACCATCTCGGATCTGTGTCCCTCCTTTAAGTGAAAAAGGTTCAATCTTTGGTCTCTGAGGCTGTTGGGTTTTCGTCATTGAAGAAGAAGAAGGGGTGCTGCTTCCAATCTCTCTCACGCTCACAAGGGAGATCCTTGTCTCGTTCTGACGGCTGATCCCAAGCCTCGTCTTCGTTGGACTCAGGACTTGCATGAACGGTTCGTTGATGCGGTAACGCAGCTTGGGGGAGCAAGTAAAGCTACACCAAAAGCAATCATGCGGACCATGAATGTCAAGGGTTTGACTCTGTTTCATTTGAAGAGTCATCTTCAGAAATACAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAAGATGGTTCATATCTTTTAGAAAGCCCTGGCGCTGATAACTCATCTCCAAAGTTGCCAACTTCAGATACAAATGAGGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAGGCAGAGAAGCACTTGCAGATTCGCCAGGATGCAGAAAGGAGATACATGGCCATGCTCGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATTGGTGCCACAGTCATAGACACAGACAGCCAAAAGTTTCAAGGAATTGGAAGCAAAGCACCTAGAGGTACCTTGGTTGATCCTCTTGGTTTTTACTCCATGCCATCCACTGAGGTGGCTGGAGTGAATGTCCCAGAAGAAGAAATACCGCTGAGTCTCCCACCCCAAAGGGCTGATTGTTCAACCGAAAGTTGTTTAACCTCACATGAGAGTTCTGGAGGATTGGCTTTAGAAGGATCTCCCGGCGAGGGAAAAAGGAGGATGCTTGGCATGGACTCGATGGCAGCACCTTTGATATGGAGTGAAGCTAAGATGAGAACTCAAGCCATCAATGTAGCCCAAGGTAATCTTCCTCAAGGAATAACTAGGTATGGCATGTAGGGATGGAAGGTCTACTTGATGGTTTATCCCGGCATGATATATAAACCTTTGGGCTTTCATTCATTCCTTTTTTTATAGGTACTTGAACTCTTCATGTCTTGTAAGTTAGTGAGACATAGGTGGAATCAATTTTACCCCTTTGTAAATTCAATCTACTGTGACTTTAAAAATTGCAAAAAACTAGCTTTGACTATACAAAATTTGTGTGTTTTGGTGACTTCTATGGATTCCTTATTGTTCATTGATTCATGCTGAATAAAGGGTGTGACGTCCTTTCCTTCAAATATATAAGTGGAGTCATTATTAAACTCTTGAACTCTTTTCA

Coding sequences of Glyma15g12930

Limit To All Plant Sequences

>Glyma15g12930.1   sequence type=CDS   gene model=Glyma15g12930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACTCGAGGCTCATACACCCCCACGATGGGATTGTGACGCAGGATGACTTGCAGGGTGCTGCTTCCAATCTCTCTCACGCTCACAAGGGAGATCCTTGTCTCGTTCTGACGGCTGATCCCAAGCCTCGTCTTCGTTGGACTCAGGACTTGCATGAACGGTTCGTTGATGCGGTAACGCAGCTTGGGGGAGCAAGTAAAGCTACACCAAAAGCAATCATGCGGACCATGAATGTCAAGGGTTTGACTCTGTTTCATTTGAAGAGTCATCTTCAGAAATACAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAAGATGGTTCATATCTTTTAGAAAGCCCTGGCGCTGATAACTCATCTCCAAAGTTGCCAACTTCAGATACAAATGAGGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAGGCAGAGAAGCACTTGCAGATTCGCCAGGATGCAGAAAGGAGATACATGGCCATGCTCGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATTGGTGCCACAGTCATAGACACAGACAGCCAAAAGTTTCAAGGAATTGGAAGCAAAGCACCTAGAGGTACCTTGGTTGATCCTCTTGGTTTTTACTCCATGCCATCCACTGAGGTGGCTGGAGTGAATGTCCCAGAAGAAGAAATACCGCTGAGTCTCCCACCCCAAAGGGCTGATTGTTCAACCGAAAGTTGTTTAACCTCACATGAGAGTTCTGGAGGATTGGCTTTAGAAGGATCTCCCGGCGAGGGAAAAAGGAGGATGCTTGGCATGGACTCGATGGCAGCACCTTTGATATGGAGTGAAGCTAAGATGAGAACTCAAGCCATCAATGTAGCCCAAGGTAATCTTCCTCAAGGAATAACTAGGTATGGCATGTAG

>Glyma15g12930.2   sequence type=CDS   gene model=Glyma15g12930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGGACCATGAATGTCAAGGGTTTGACTCTGTTTCATTTGAAGAGTCATCTTCAGAAATACAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAAGATGGTTCATATCTTTTAGAAAGCCCTGGCGCTGATAACTCATCTCCAAAGTTGCCAACTTCAGATACAAATGAGGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAGGCAGAGAAGCACTTGCAGATTCGCCAGGATGCAGAAAGGAGATACATGGCCATGCTCGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATTGGTGCCACAGTCATAGACACAGACAGCCAAAAGTTTCAAGGAATTGGAAGCAAAGCACCTAGAGGTACCTTGGTTGATCCTCTTGGTTTTTACTCCATGCCATCCACTGAGGTGGCTGGAGTGAATGTCCCAGAAGAAGAAATACCGCTGAGTCTCCCACCCCAAAGGGCTGATTGTTCAACCGAAAGTTGTTTAACCTCACATGAGAGTTCTGGAGGATTGGCTTTAGAAGGATCTCCCGGCGAGGGAAAAAGGAGGATGCTTGGCATGGACTCGATGGCAGCACCTTTGATATGGAGTGAAGCTAAGATGAGAACTCAAGCCATCAATGTAGCCCAAGGTAATCTTCCTCAAGGAATAACTAGGTATGGCATGTAG

Predicted protein sequences of Glyma15g12930

Limit To All Plant Sequences

>Glyma15g12930.1   sequence type=predicted peptide   gene model=Glyma15g12930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYSRLIHPHDGIVTQDDLQGAASNLSHAHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDVGEGCKDGSYLLESPGADNSSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGATVIDTDSQKFQGIGSKAPRGTLVDPLGFYSMPSTEVAGVNVPEEEIPLSLPPQRADCSTESCLTSHESSGGLALEGSPGEGKRRMLGMDSMAAPLIWSEAKMRTQAINVAQGNLPQGITRYGM*

>Glyma15g12930.2   sequence type=predicted peptide   gene model=Glyma15g12930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTMNVKGLTLFHLKSHLQKYRLGKQSGKDVGEGCKDGSYLLESPGADNSSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGATVIDTDSQKFQGIGSKAPRGTLVDPLGFYSMPSTEVAGVNVPEEEIPLSLPPQRADCSTESCLTSHESSGGLALEGSPGEGKRRMLGMDSMAAPLIWSEAKMRTQAINVAQGNLPQGITRYGM*

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