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Report for Sequence Feature Glyma15g12450

Feature Type:gene_model
Chromosome:Gm15
Start:9193045
stop:9193758
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g12450
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G09950AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3060354-3060632 REVERSE LENGTH=92 SoyBaseE_val: 1.00E-22ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1MFQ9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFQ9_SOYBN SoyBaseE_val: 4.00E-82ISS

Expression Patterns of Glyma15g12450
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g12450 not represented in the dataset
Glyma15g12450 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g12450
ParalogEvidenceComments
Glyma09g01520 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g12450 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g117600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g12450
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g12450
>Glyma15g12450.1   sequence type=CDS   gene model=Glyma15g12450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTAAGATGGGTTCTCCACTCAGCTTGCCATGTTTTGGGGTACCCTACGAGGAACATAGAAGAAGAGGAGTGCAAGAAGATTGAAGGTTACTCAAATATTGGAGAGGCCAAAAGCGTGAAGGGGTTATCCCTTTCAAACAATTTCAATGAGGTTGATCAGTGCTATCCTTGTTCAGGGTTTCAAATGCCACTTCACTATCCACGCTACACCAAACAAGACTATGAGAGCATGGAGGAGTGGAAGGTGGACTTGCTTCTTAAGCAATATGGGTTAAGTTTCAAGGGCACCCTTGATGAGAAGAGAGCTTTTGCAATGGGAGCATTCTTGTGGCCCGATCAAGATTAG
Predicted protein sequences of Glyma15g12450
>Glyma15g12450.1   sequence type=predicted peptide   gene model=Glyma15g12450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALRWVLHSACHVLGYPTRNIEEEECKKIEGYSNIGEAKSVKGLSLSNNFNEVDQCYPCSGFQMPLHYPRYTKQDYESMEEWKVDLLLKQYGLSFKGTLDEKRAFAMGAFLWPDQD*






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