Glyma15g12400 - SoyBase

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Report for Sequence Feature Glyma15g12400

Feature Type:	gene_model
Chromosome:	Gm15
Start:	9159328
stop:	9165541
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g12400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G16420	AT	Annotation by Michelle Graham. TAIR10: homolog of yeast ADA2 2B \| chr4:9262805-9265775 REVERSE LENGTH=483	SoyBase	E_val: 0	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0006396	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA processing	SoyBase	N/A	ISS
GO:0008284	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation	SoyBase	N/A	ISS
GO:0009631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cold acclimation	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009735	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus	SoyBase	N/A	ISS
GO:0016246	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA interference	SoyBase	N/A	ISS
GO:0022402	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle process	SoyBase	N/A	ISS
GO:0042127	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell proliferation	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0003713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription coactivator activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR12374	Panther	TRANSCRIPTIONAL ADAPTOR 2 (ADA2)-RELATED	JGI		ISS
PTHR12374:SF12	Panther	MYB FAMILY TRANSCRIPTION FACTOR	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
PF00569	PFAM	Zinc finger, ZZ type,	JGI		ISS
PF04433	PFAM	SWIRM domain	JGI		ISS
UniRef100_G7IPA7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histone acetyltransferase complex component n=1 Tax=Medicago truncatula RepID=G7IPA7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MFQ5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFQ5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g12400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g12400

Paralog	Evidence	Comments
Glyma09g01501	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g12400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g117100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g12400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g12400

Limit To All Plant Sequences

>Glyma15g12400.1   sequence type=CDS   gene model=Glyma15g12400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCGCTCTCGTGGGAATTTTCACCACGCCGACGAGGACCCCAACCAGAGGTCAAGGAGAAAAAAGAATGCTGCCAGTGGAGAGAATTCAGAATCTGGAGCTGCAGGCCAAGGAGCAGGTGAAGGGAAAAAGGCTCTGTACCACTGCAATTATTGTAATAAAGATATAACAGGAAAAATCCGTATTAAGTGTGCCATGTGCCCAGATTTTGACTTGTGTATAGAGTGCTTTTCTGTTGGAGCTGAGGTGACACCTCATAAAAGCAGCCACCCTTACAGGGTTATGGATAATTTGTCTTTCCCTCTTATTTGCCCAGACTGGAATGCAGATGATGAAATCTTGCTTCTAGAGGGAATTGAAATGTATGGCTTGGGAAACTGGACAGAAGTTGCTGAGCATGTTGGAACCAAAAACAAAGAGTCATGCATAGAACACTATAGGAATGTATACCTGAACTCCCCGTTCTTTCCTGTTCCGGACATGTCTCATGTTGTTGGGAAAAACAGAAAAGAACTTCTTGCCATGGCCAAAGGGCAGGGTGAAGACAAGAAAGGAATTTCCATGGGGGATCTTAGTATAAAGGCAGAATCTTCCTTTTCTCCATCTAGAGCCAAGGTTGAAGATTCGCATAAAGCTGGCTCCTCTAATCGCTTGGCATCCGGTTTGAATTCAGAGTCCGATGGCCCCTTGGGTAACACACATGCTGCAAACCAAAAGGCATCTAATGTGGGCCGTGGAAAAGGTGGTCCTGGAATCATTAAAATGGAAGATTCTCAACTAGACAGAGATTTTGGAGGAAAAAAGCCTACTTCCTCTGGAAATGAAGGTCCTTCTTTAGTAGAATCGAGTGGTTATAACGCCAAAAGGCAGGAATTTGATCCTGAATATGATAATGACGCTGAACAACTACTCGCTGAAATGGAATTTAAGGACACTGACACTGATGATGAGCGAGAGCTGAAACTACGGGTGTTGCGTTTCTATGCAAAAAGGCTTGATGAAAGAAAGCGTAGGAAGGATTTCATACTTGAAAGAAATTTGTTATACCCAAATCCATTTGAGAAGGATTTAACACCTGAGGAGAAGACAATATGTCGGAAGTATGACTTATTCATGCGCTTTCATACTAAGGAGGAGCATGAGGAGTTGCTTAGAACCGTTATCTCTGAACATAGAACCCGTAAAAGACTTCAAGAGCTTAAGGAAGCCCGGGCTGCTGGTTGCCGCAATTCAGCTGAAGCTGATAGATATCTGGCGCAAAAGAGAAGAAGGGAAGCTGAAGAAAGTGGTTGTAGGACAAAAGAAAGTGCTCAGGGCGGCCCAAGCAATCAAGGGGTTCCTAATGCATTGATGTCTCCAGACTCTGCTGGCAAGGATTTGAGTGGAAGACCTGCAGGGCCTGCTACTTCTAGTTCTGTCAATGAAATGGATGTGACGGGATACTATGGGGCAGATTTACTTTCTGAACCGGAGAAACGTTTATGCTGTGAGCTAAGGTTGCCTCCAGCCATGTATCTAAAGATGCAAGAACAACTGTCTCTGCAAATACTTGCCGGCACTGTCGCTGCAAAATCTGATGCTCATCAATTGTTCAAGATGGATGCCATGAAAATTGACAGGGTGTATGATATGCTCATTAAAAAGGGGATTGGTTCCCCCTGA

Predicted protein sequences of Glyma15g12400

Limit To All Plant Sequences

>Glyma15g12400.1   sequence type=predicted peptide   gene model=Glyma15g12400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRSRGNFHHADEDPNQRSRRKKNAASGENSESGAAGQGAGEGKKALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSSHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWTEVAEHVGTKNKESCIEHYRNVYLNSPFFPVPDMSHVVGKNRKELLAMAKGQGEDKKGISMGDLSIKAESSFSPSRAKVEDSHKAGSSNRLASGLNSESDGPLGNTHAANQKASNVGRGKGGPGIIKMEDSQLDRDFGGKKPTSSGNEGPSLVESSGYNAKRQEFDPEYDNDAEQLLAEMEFKDTDTDDERELKLRVLRFYAKRLDERKRRKDFILERNLLYPNPFEKDLTPEEKTICRKYDLFMRFHTKEEHEELLRTVISEHRTRKRLQELKEARAAGCRNSAEADRYLAQKRRREAEESGCRTKESAQGGPSNQGVPNALMSPDSAGKDLSGRPAGPATSSSVNEMDVTGYYGADLLSEPEKRLCCELRLPPAMYLKMQEQLSLQILAGTVAAKSDAHQLFKMDAMKIDRVYDMLIKKGIGSP*

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