SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g12370

Feature Type:gene_model
Chromosome:Gm15
Start:9143102
stop:9146079
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g12370
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G35760AT Annotation by Michelle Graham. TAIR10: Uncharacterised protein family (UPF0497) | chr2:15032059-15033094 FORWARD LENGTH=201 SoyBaseE_val: 1.00E-87ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009741GO-bp Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus SoyBaseN/AISS
GO:0015996GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR11615Panther NITRATE, FROMATE, IRON DEHYDROGENASE JGI ISS
PTHR11615:SF57Panther INTEGRAL MEMBRANE FAMILY PROTEIN JGI ISS
PF04535PFAM Domain of unknown function (DUF588) JGI ISS
UniRef100_A7R385UniRef Annotation by Michelle Graham. Most informative UniRef hit: CASP-like protein GSVIVT00013502001 n=1 Tax=Vitis vinifera RepID=CSPLC_VITVI SoyBaseE_val: 5.00E-104ISS
UniRef100_I1MFQ2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFQ2_SOYBN SoyBaseE_val: 7.00E-144ISS

Expression Patterns of Glyma15g12370
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g12370
ParalogEvidenceComments
Glyma09g01470 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g12370 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g116800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g12370
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g12370
>Glyma15g12370.1   sequence type=CDS   gene model=Glyma15g12370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAGTTATTTGGGTGTAGGTGTTAGTCCTGGGAATGTCCCAGTTTACCACAGCACAAATGTGAAAGTGTTAGATAGGAAGATCAAGATAACAGAATTGGTGTTGAGGTGTGTGATCCTTGGTTTAGGGGTTCTTGCAGCTGTTCTTGTGGGGACTGATTCCGAAGTCAAGGAGTTTTTCTCATTTCAGAAGGAAGCTAAATTTACAGACATGAAGTCTTTGGTGTTCCTGGTGGTTGCAAATGGGTTAGCTGCTGGCTACTCCTTAATCCAAGGGTTGCGCTGTATCCTTAGTATGATCAGGGGAAGAGTACTCTTCAGCAAGCCCCTAGCTTGGGCCATTTTTTCTGGTGATCAGGTAATGGCCTATGTAACAGTGGTGGCATTGGCGGCGGCAGGGCAATCGGGTATGATTGCAAGGGTTGGCCAGCCAGAACTGCAATGGATGAAGATATGCAACATGTATGGGAAATTCTGCAACCAAGTGGGAGAAGGGATAGCTAGTGCTTTTGTGGCTAGCCTTAGCATGGTGGTCATGTCTTGTATTTCTGCTTTCAGCCTCTTCCGTTTGTATGGTGGTAACAAAACCAAAAATGTGCATTGGTAG
Predicted protein sequences of Glyma15g12370
>Glyma15g12370.1   sequence type=predicted peptide   gene model=Glyma15g12370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSYLGVGVSPGNVPVYHSTNVKVLDRKIKITELVLRCVILGLGVLAAVLVGTDSEVKEFFSFQKEAKFTDMKSLVFLVVANGLAAGYSLIQGLRCILSMIRGRVLFSKPLAWAIFSGDQVMAYVTVVALAAAGQSGMIARVGQPELQWMKICNMYGKFCNQVGEGIASAFVASLSMVVMSCISAFSLFRLYGGNKTKNVHW*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo