Glyma15g12300 - SoyBase

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Report for Sequence Feature Glyma15g12300

Feature Type:	gene_model
Chromosome:	Gm15
Start:	9088505
stop:	9092279
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g12300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G23070	AT	Annotation by Michelle Graham. TAIR10: Thymidine kinase \| chr5:7741979-7742827 FORWARD LENGTH=282	SoyBase	E_val: 1.00E-105	ISS
GO:0009061	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaerobic respiration	SoyBase	N/A	ISS
GO:0009165	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0019690	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine deoxyribonucleoside interconversion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004797	GO-mf	Annotation by Michelle Graham. GO Molecular Function: thymidine kinase activity	SoyBase	N/A	ISS
KOG3125	KOG	Thymidine kinase	JGI		ISS
PTHR11441	Panther	THYMIDINE KINASE	JGI		ISS
PF00265	PFAM	Thymidine kinase	JGI		ISS
UniRef100_I1MFP9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Thymidine kinase n=1 Tax=Glycine max RepID=I1MFP9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1MFP9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Thymidine kinase n=1 Tax=Glycine max RepID=I1MFP9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g12300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g12300

Paralog	Evidence	Comments
Glyma09g01420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g12300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g116000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g12300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g12300

Limit To All Plant Sequences

>Glyma15g12300.1   sequence type=CDS   gene model=Glyma15g12300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTCTCTTCTGAACCCAAAGTTCTCAGCTTTATCTCCCAAAGCCTCTCCTTTTGCTCTGTTCTCACTTCCTTCTCAATCCACAACTCGATTCTCTTTCCGCAGCAACCCGCGTCGAATCCCCAATCGTCTCCTCCGCCTCAACCCACCACCCTTTTCGTCCAATAATTTCATTTGCGCCATTCAAAATCGAAGCTTGCAAACGGAGCCCTCGCCGCCTCCCTCCGGCGAGATTCACGTCATTGTGGGGCCCATGTTCGCCGGAAAAACCACCTCGCTCCTTCGTCGGATTCAGTCAGAAACCGCCAACGGCAGAAATGTAGCAATAATTAAATCAAGCAAAGATACAAGATATGGATTAGACTCAATTGTTACACACGATGGTGCAAAATTACCATGTTGGGCACTGGCAAACTTATCATCATTCAAGCAGAAGTTTGGAATGGATGCTTATGAGAAGCTGGATGTGATTGGTATTGATGAAGCTCAATTCTTTGACGACCTATATGAATTCTGTCGTCAAGCTGCTGATCATGATGGAAAAACAGTAATAGTTGCAGGACTAGATGGTAACTATTTGAGGAGGAGCTTTGGTTCCGTCCTTGATATAATTCCCCTTGCTGATTCAGTAACCAAGTTAACTGCTAGATGTGAAATATGTGGGAAGCGTGCTTGCTTTACCCTGAGGAAGACACAGGATAAGCAGATTGAGCTGATTGGTGGTGTTGATGTCTACATGCCAGTGTGTCGGCAGCACTATGCTAGTGGACAGGTAGCCATGGAAGCCACAAGGCATGTCCTTGAATCTAAGAAGGTTGAATGTGGCTCCCATACATGA

Predicted protein sequences of Glyma15g12300

Limit To All Plant Sequences

>Glyma15g12300.1   sequence type=predicted peptide   gene model=Glyma15g12300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSLLNPKFSALSPKASPFALFSLPSQSTTRFSFRSNPRRIPNRLLRLNPPPFSSNNFICAIQNRSLQTEPSPPPSGEIHVIVGPMFAGKTTSLLRRIQSETANGRNVAIIKSSKDTRYGLDSIVTHDGAKLPCWALANLSSFKQKFGMDAYEKLDVIGIDEAQFFDDLYEFCRQAADHDGKTVIVAGLDGNYLRRSFGSVLDIIPLADSVTKLTARCEICGKRACFTLRKTQDKQIELIGGVDVYMPVCRQHYASGQVAMEATRHVLESKKVECGSHT*

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