Report for Sequence Feature Glyma15g12300
Feature Type: gene_model
Chromosome: Gm15
Start: 9088505
stop: 9092279
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g12300
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G23070 AT
Annotation by Michelle Graham. TAIR10: Thymidine kinase | chr5:7741979-7742827 FORWARD LENGTH=282
SoyBase E_val: 1.00E-105 ISS
GO:0009061 GO-bp
Annotation by Michelle Graham. GO Biological Process: anaerobic respiration
SoyBase N/A ISS
GO:0009165 GO-bp
Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process
SoyBase N/A ISS
GO:0019690 GO-bp
Annotation by Michelle Graham. GO Biological Process: pyrimidine deoxyribonucleoside interconversion
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0004797 GO-mf
Annotation by Michelle Graham. GO Molecular Function: thymidine kinase activity
SoyBase N/A ISS
KOG3125
KOG
Thymidine kinase
JGI ISS
PTHR11441 Panther
THYMIDINE KINASE
JGI ISS
PF00265 PFAM
Thymidine kinase
JGI ISS
UniRef100_I1MFP9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Thymidine kinase n=1 Tax=Glycine max RepID=I1MFP9_SOYBN
SoyBase E_val: 0 ISS
UniRef100_I1MFP9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Thymidine kinase n=1 Tax=Glycine max RepID=I1MFP9_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g12300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g12300
Paralog Evidence Comments
Glyma09g01420 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g12300 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g116000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g12300
Coding sequences of Glyma15g12300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g12300.1 sequence type=CDS gene model=Glyma15g12300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGTCTCTTCTGAACCCAAAGTTCTCAGCTTTATCTCCCAAAGCCTCTCCTTTTGCTCTGTTCTCACTTCCTTCTCAATCCACAACTCGATTCTCTTTCCGCAGCAACCCGCGTCGAATCCCCAATCGTCTCCTCCGCCTCAACCCACCACCCTTTTCGTCCAATAATTTCATTTGCGCCATTCAAAATCGAAGCTTGCAAACGGAGCCCTCGCCGCCTCCCTCCGGCGAGATTCACGTCATTGTGGGGCCCATGTTCGCCGGAAAAACCACCTCGCTCCTTCGTCGGATTCAGTCAGAAACCGCCAACGGCAGAAATGTAGCAATAATTAAATCAAGCAAAGATACAAGATATGGATTAGACTCAATTGTTACACACGATGGTGCAAAATTACCATGTTGGGCACTGGCAAACTTATCATCATTCAAGCAGAAGTTTGGAATGGATGCTTATGAGAAGCTGGATGTGATTGGTATTGATGAAGCTCAATTCTTTGACGACCTATATGAATTCTGTCGTCAAGCTGCTGATCATGATGGAAAAACAGTAATAGTTGCAGGACTAGATGGTAACTATTTGAGGAGGAGCTTTGGTTCCGTCCTTGATATAATTCCCCTTGCTGATTCAGTAACCAAGTTAACTGCTAGATGTGAAATATGTGGGAAGCGTGCTTGCTTTACCCTGAGGAAGACACAGGATAAGCAGATTGAGCTGATTGGTGGTGTTGATGTCTACATGCCAGTGTGTCGGCAGCACTATGCTAGTGGACAGGTAGCCATGGAAGCCACAAGGCATGTCCTTGAATCTAAGAAGGTTGAATGTGGCTCCCATACATGA
Predicted protein sequences of Glyma15g12300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g12300.1 sequence type=predicted peptide gene model=Glyma15g12300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKSLLNPKFSALSPKASPFALFSLPSQSTTRFSFRSNPRRIPNRLLRLNPPPFSSNNFICAIQNRSLQTEPSPPPSGEIHVIVGPMFAGKTTSLLRRIQSETANGRNVAIIKSSKDTRYGLDSIVTHDGAKLPCWALANLSSFKQKFGMDAYEKLDVIGIDEAQFFDDLYEFCRQAADHDGKTVIVAGLDGNYLRRSFGSVLDIIPLADSVTKLTARCEICGKRACFTLRKTQDKQIELIGGVDVYMPVCRQHYASGQVAMEATRHVLESKKVECGSHT*