Report for Sequence Feature Glyma15g12281
Feature Type: gene_model
Chromosome: Gm15
Start: 9079750
stop: 9086782
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g12281
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G16480 AT
Annotation by Michelle Graham. TAIR10: inositol transporter 4 | chr4:9291246-9293083 FORWARD LENGTH=582
SoyBase E_val: 5.00E-151 ISS
GO:0006810 GO-bp
Annotation by Michelle Graham. GO Biological Process: transport
SoyBase N/A ISS
GO:0055085 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane transport
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0005215 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transporter activity
SoyBase N/A ISS
GO:0005351 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity
SoyBase N/A ISS
GO:0005366 GO-mf
Annotation by Michelle Graham. GO Molecular Function: myo-inositol:hydrogen symporter activity
SoyBase N/A ISS
GO:0015144 GO-mf
Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity
SoyBase N/A ISS
GO:0022857 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity
SoyBase N/A ISS
PTHR24063 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24063:SF85 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00083 PFAM
Sugar (and other) transporter
JGI ISS
UniRef100_G7IP93 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Inositol transporter n=1 Tax=Medicago truncatula RepID=G7IP93_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233ABCA UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233ABCA related cluster n=1 Tax=unknown RepID=UPI000233ABCA
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g12281
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g12281
Paralog Evidence Comments
Glyma09g01410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g12281 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g115900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g12281
Coding sequences of Glyma15g12281
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g12281.1 sequence type=CDS gene model=Glyma15g12281 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGGAAAGGGTAGCAAGCAAGACCGAGTTCACAGAATGCTGGCGCAGAACAACTGAGTCACCTTACATCATGCGCCTTGCTTTATCTGCTGGCATAGGAGGCCTCCTCTTTGGTTATGATACAGGGGTGATTTCTAGGGCTTTGTTATACATCCGTGATGATTTTGACCAAGTTGACAAGAAAACATGCTCCAAAGTGTTTGTTGGTTTGGGAGTAGGAATGGCATCTATGACAGCCCCTCTATACATCTCTGAAGCTTCCCCGGCTAAGATCAGAGGTGCTTTAGTCAGTATCAATGCTTTTCTCATCACTGGTGGCCAGTTTCTGTCTTACCTCATCAATTTGGCATTCACCAAGGCTCCTGGAAGCTGGCGTTGGATGCTTGGGGTGGCAGGAGTTCCCGCTGTGATACAGTTTGTGTCAATGTTGTCCCTCCCTGAATCACCTAGATGGCTCTATAGACAGAACAAGGAAGAGGAGGCAAAGTACATTCTGTCAAAAATCTATCGTCCAAGTGAAGTTGAAGACGAAATGAGAGCCATGCAAGAATCAATTGAAACTGAGAGGGAAGAGGAAGGTTTGATTGGGCATAGTCTAGCACAGAAACTGAAGAATGCCTTGGCTAATGTTGTAGTTCGAAGAGCGCTCTACGCAGGCATCACTGTCCAAGTGGCTCAACAGTTTGTTGGCATCAATACTGTCATGTATTACAGTCCAACCATAGTTCAGTTTGCTGGAATTGACTCCAACTCCACAGCTCTTGCCCTTTCTCTGGTTACTTCTGGATTGAACGCTGTTGGCTCTATCTTGAGCAAGGTTTTCAGTGATAGATATGGAAGGAGAAAGTTGATGCTCATATCCATGATTGGAATCATTGTTTGCCTCATAATGTTAAGTGTTACATTCAACCAAGCAGCTCATCATGCTCCTGCCATTAGTAACCAGGATACCCTTAGCTTTGGTGCTAACTCTACATGCCGGGCTTACACAAAGGCCCCAAATTTCTCCTCATGGAACTGCATGCATTGTTTGCAAGTGGACTGTGCCTTTTGTGCCAGTAGCAAGCGTGATAACTTTGATTAA
Predicted protein sequences of Glyma15g12281
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g12281.1 sequence type=predicted peptide gene model=Glyma15g12281 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEERVASKTEFTECWRRTTESPYIMRLALSAGIGGLLFGYDTGVISRALLYIRDDFDQVDKKTCSKVFVGLGVGMASMTAPLYISEASPAKIRGALVSINAFLITGGQFLSYLINLAFTKAPGSWRWMLGVAGVPAVIQFVSMLSLPESPRWLYRQNKEEEAKYILSKIYRPSEVEDEMRAMQESIETEREEEGLIGHSLAQKLKNALANVVVRRALYAGITVQVAQQFVGINTVMYYSPTIVQFAGIDSNSTALALSLVTSGLNAVGSILSKVFSDRYGRRKLMLISMIGIIVCLIMLSVTFNQAAHHAPAISNQDTLSFGANSTCRAYTKAPNFSSWNCMHCLQVDCAFCASSKRDNFD*