Glyma15g12130 - SoyBase

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Report for Sequence Feature Glyma15g12130

Feature Type:	gene_model
Chromosome:	Gm15
Start:	8980624
stop:	8981702
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g12130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
ATCG00730	AT	Annotation by Michelle Graham. TAIR10: photosynthetic electron transfer D \| chrC:76481-77672 FORWARD LENGTH=160	SoyBase	E_val: 1.00E-64	ISS
GO:0006091	GO-bp	Annotation by Michelle Graham. GO Biological Process: generation of precursor metabolites and energy	SoyBase	N/A	ISS
GO:0006354	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation	SoyBase	N/A	ISS
GO:0009767	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport chain	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0022904	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory electron transport chain	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009512	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytochrome b6f complex	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0042651	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid membrane	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0045156	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	SoyBase	N/A	ISS
PTHR19271	Panther	CYTOCHROME B	JGI		ISS
PF00032	PFAM	Cytochrome b(C-terminal)/b6/petD	JGI		ISS
UniRef100_A6MMN8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome b6/f complex subunit IV n=1 Tax=Dioscorea elephantipes RepID=A6MMN8_DIOEL	SoyBase	E_val: 8.00E-63	ISS
UniRef100_I1MFN3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFN3_SOYBN	SoyBase	E_val: 5.00E-84	ISS

Expression Patterns of Glyma15g12130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g12130 not represented in the dataset	Glyma15g12130 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g12130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g114600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g12130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g12130

Limit To All Plant Sequences

>Glyma15g12130.1   sequence type=CDS   gene model=Glyma15g12130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCATAATTATTATGGAGAACTTGTATGGCCCAATGATCTTTTATATATTTTTCCAGTAGTAATTCTAGGTACTATTGCCTGTAACGTAGGCTTAGCGGTTCTAGAACCATCCATGATTGGGGAACCCGCGGATCCATTTGCAACTCCTTTGGAAATATTACCCGAATGGTATTTCTTTCCCATATTTCAAATACTTCATACAGTGCCCAATAAGTTATTGGGCGTTCTTTTAATGGTTTCAGTACCTATAGGATTGTTAGCAGTACCCTTTTTGGAGAATGTTAATAAATTCCAAAACCCATTTCAACCACATCTTTTTGATTGGTACTGTAGTTGCCCTTTGGTTAGGTATTGGAGCAACATTACCTATTGA

Predicted protein sequences of Glyma15g12130

Limit To All Plant Sequences

>Glyma15g12130.1   sequence type=predicted peptide   gene model=Glyma15g12130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGHNYYGELVWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPIFQILHTVPNKLLGVLLMVSVPIGLLAVPFLENVNKFQNPFQPHLFDWYCSCPLVRYWSNITY*

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