SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G12050 | AT | Annotation by Michelle Graham. TAIR10: fumarylacetoacetase, putative | chr1:4072904-4075856 FORWARD LENGTH=421 | SoyBase | E_val: 0 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family metabolic process | SoyBase | N/A | ISS |
| GO:0015996 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004334 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: fumarylacetoacetase activity | SoyBase | N/A | ISS |
| KOG2843 | KOG | Fumarylacetoacetase | JGI | ISS | |
| PTHR11820 | Panther | FUMARYLACETOACETATE HYDROLASE | JGI | ISS | |
| PTHR11820:SF1 | Panther | 2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE ISOMERASE | JGI | ISS | |
| PF01557 | PFAM | Fumarylacetoacetate (FAA) hydrolase family | JGI | ISS | |
| PF09298 | PFAM | Domain of unknown function (DUF1969) | JGI | ISS | |
| UniRef100_I1MFN0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFN0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q2HT34 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Fumarylacetoacetase n=1 Tax=Medicago truncatula RepID=Q2HT34_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma15g12100 not represented in the dataset |
Glyma15g12100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g01270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g114300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g12100.1 sequence type=CDS gene model=Glyma15g12100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGTGCTTCAATCTTTCGTTTCGGTCCACCCAGATTCTCACTTCCCCATACAGAACCTCCCCTACGGAGTGTTCAAGCCCCAATCCGCTTCTCCTCCTCGTCCCGGCGTCGCCATCGGAGACTTCGTCCTCGACCTCTCCGAAATCTCTTCCGCTGGTCTCTTCGACGGCCCTCTCCTCAAAAACTCCGATTGCTTCCTCCAGCCTAATCTAAATAAGTTTGTATCACTGGGAAGGCCAGCTTGGAAGGAAGCTCGTGCCACTCTTCAAAAGCTTTTATCAGCAACTGAGCCAACCTTGAGGGACAACGTGGTTTTGAGGCAGAAATCACTACTGCCTGTGAGTACTGTGGAGTTGCTTCTCCCTGTTGTTGTTGGGGACTATACCGATTTCTTTACGTCTCTGCATCACACTAAAAATTGTGGGCTCATTTTTCGTGGGCCACAGACTCCTGTTCTAGATAATTGGTATCGCCTGCCTGTTGCCTACCATGGACGAGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTTCGGCCAAGAGGTCAAGCTCATCCAATTGGCAGCTCTACTCCCTACTTTGGCCCTTCATTAAAGCTAGACTTTGAGTTGGAAATGGCTACTATTGTTGGACCTGGAAATGAATTGGGAAAACCTGTTGATATTAACAATGCTGAAGATCACATCTTTGGACTTGTTGTAATGAACGATTGGAGTGCTCGAGATATTCAGGCATGGGAATATATTCCTCTTGGTCCTTTTCTTGGCAAGAGTTTTGGAACAACAATATCACCTTGGATTGTGACCTTGGAAGCATTAGAACCTTTTGCTTGCGAAGCCCCAAAACAGGATCCTCCTCCACTTCCATACTTGACTGAAAAAGTATCCAGAATCTATGATATTTCCCTAGAGGCTCACATAAAACCTGCGGGGCATGAAGATTCAGGTGTGGTGTCACGGACTAATCTAAAGCACTTATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAACCTTAGGCCAGGCGATCTCCTCGGAACTGGGACAGTTAGTGGTCCTGAGCCGGAGTCCCGGGCATGCTTGCTAGAATTAACGTGGAATGGACAAAACGCGGTACCAGTGAATGGGTTAAATAAGAAATTTCTTGAAGATGGAGATGAAGTTATCTTAACTGGATATTGCAAGGGAAATGGTTACACTATTGGGTTTGGTACCTGCTCGGGCAAGATTGTTCCCGCAGCTCCCTGA
>Glyma15g12100.1 sequence type=predicted peptide gene model=Glyma15g12100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVLQSFVSVHPDSHFPIQNLPYGVFKPQSASPPRPGVAIGDFVLDLSEISSAGLFDGPLLKNSDCFLQPNLNKFVSLGRPAWKEARATLQKLLSATEPTLRDNVVLRQKSLLPVSTVELLLPVVVGDYTDFFTSLHHTKNCGLIFRGPQTPVLDNWYRLPVAYHGRASSVVISGTDIVRPRGQAHPIGSSTPYFGPSLKLDFELEMATIVGPGNELGKPVDINNAEDHIFGLVVMNDWSARDIQAWEYIPLGPFLGKSFGTTISPWIVTLEALEPFACEAPKQDPPPLPYLTEKVSRIYDISLEAHIKPAGHEDSGVVSRTNLKHLYWTLTQQLAHHTINGCNLRPGDLLGTGTVSGPEPESRACLLELTWNGQNAVPVNGLNKKFLEDGDEVILTGYCKGNGYTIGFGTCSGKIVPAAP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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