Glyma15g12090 - SoyBase

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Report for Sequence Feature Glyma15g12090

Feature Type:	gene_model
Chromosome:	Gm15
Start:	8959426
stop:	8965101
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g12090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G12610	AT	Annotation by Michelle Graham. TAIR10: transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors \| chr4:7455565-7457465 FORWARD LENGTH=400	SoyBase	E_val: 4.00E-131	ISS
GO:0006367	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription initiation from RNA polymerase II promoter	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008022	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein C-terminus binding	SoyBase	N/A	ISS
KOG2393	KOG	Transcription initiation factor IIF, large subunit (RAP74)	JGI		ISS
PTHR13011	Panther	TFIIF-ALPHA	JGI		ISS
PF05793	PFAM	Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)	JGI		ISS
UniRef100_I1MFM9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFM9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HT28	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription Factor IIF, Rap30/Rap74, interaction n=1 Tax=Medicago truncatula RepID=Q2HT28_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g12090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g12090

Paralog	Evidence	Comments
Glyma09g01260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g12090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g114200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g12090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g12090

Limit To All Plant Sequences

>Glyma15g12090.1   sequence type=CDS   gene model=Glyma15g12090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGACGGACCTGCAATTGAAGTCGAGTTGTAGCGGATGCGGATCAACGACGGATCTCTACGGAAGCAATTGCAAGCACATGACTCTGTGCTTGAGCTGCGGCAAAACCATGGCGGAGAAACGCGCCAAATGCTTCGATTGTGGGGCCACCCTCACTCGCCTCATTCGAGAATATAATGTTCGTGCAAGTTCTACCAATGATAAGAATTACTTCATTGGAAGGTTCATAAACGGTTTGCCTGATTTTTCGAAGAAGAAAAGTGCTGAGAACAAGTGGTCTCTGCAGAAGGATGGACTGCACGGACGCCAAATTACTGATACTCTGCGGGAGAAGTACAAGAACAAGCCTTGGCTCTTGGAGGACGAAACGGGTCAGTCCCAGTTCCAGGGTCATCTAGAAGGTTCCCAATCGGCTACATATTACCTGCTAATGAAGGAAAGGAAGGAGTTTGTTGCCATTCCTGCTGGTTCTTGGTACAACTTTAACAAGGTAGCTCAATATAAGCAATTGACATTGGAGGAAGCAGAAGAGAAGATGAAGAATAGAAAGAAAACTGCAGATGGATATCAAAGATGGATGATGAAAGCAGCAAATAATGGCCCAGCTGCATTTGGTGAACATGGGAAATTTGATGACAAGGAAAGCAACACAGGTGGAGTGAGAATCCGTAAAAAAACTGGTGAGGATGATGAAGGTCATGTCTCTGATAAGGGAGAGGAGGATGAAGAGGAGGAATCAGAAAGGAAGAGTAGACTTGGACTAAATAAAAGAGCTGGTGATGATGATGAAGAAGGTCCAAGGGGAGGGGACCATGATCTAGATGACGACGATGTTGAGAAGGGTGATGATTGGGAGCATGAAGAGATTTTCACTGATGATGATGAAGCTGTTGGCAATGATCCCGAGGAAAGGGAGGATTTGGCTCCTGAAGTTCCTGCTCCTCCTGAAATCAAGCAGGATGAGGAAGAAGAGGATGAAGATAATGAAGAGGGGGGAGGTCTGAGTAAATCTGGGAAAGAACTGAAGAAGCTGCTTGGAAAAGCTAGTGGTCTGAATGAATCTGATGCAGAGGATGACGATGATGATGACGATGATGTGGAGGATGATGTTGGTGTTCCTCCTGCCATTGCTACGAAGCAAAAGGATGCTCTTAAGGAAGAACCCGTTGACAACAGCCCTTCAAAGCCAACAGCAACAGGACCTGCTCGTGGAACACCTTCTTCAAAGTCTTCAAAGGGGAAGAGAAAATTAAATGAAGAAGCAAAGCCATCTAATACTGCACCTCCAAAGAAGGTGAAGGTAGAAAATGAACCAAAAGTGTCCACCAAAGATGGAAATGGGTCTGCATCTAAAAATAGTGCACCTCCAAAAGGTACACCTCCATTGTCATCAAAGGCCGGGTCTTCCACAACCACTTCTGGACCTGTGAGTGAGGAAGAAATTAGGGCTGTTTTAAGGCAGAAGACTCCGGTGACCACTCAGGATCTTGTAGCTAAATTTAAGGCAAGACTAAGATGTTCAGAGGATAAGCAAGCATTTGCTGAGATCCTTAAGAGAATCTCTAAGATACAGAAGACTACAAGTGGAGCCAGTTATGTTATCCTGAGAGATAAGTGA

Predicted protein sequences of Glyma15g12090

Limit To All Plant Sequences

>Glyma15g12090.1   sequence type=predicted peptide   gene model=Glyma15g12090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTDLQLKSSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAEKRAKCFDCGATLTRLIREYNVRASSTNDKNYFIGRFINGLPDFSKKKSAENKWSLQKDGLHGRQITDTLREKYKNKPWLLEDETGQSQFQGHLEGSQSATYYLLMKERKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKAANNGPAAFGEHGKFDDKESNTGGVRIRKKTGEDDEGHVSDKGEEDEEEESERKSRLGLNKRAGDDDEEGPRGGDHDLDDDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEEEDEDNEEGGGLSKSGKELKKLLGKASGLNESDAEDDDDDDDDVEDDVGVPPAIATKQKDALKEEPVDNSPSKPTATGPARGTPSSKSSKGKRKLNEEAKPSNTAPPKKVKVENEPKVSTKDGNGSASKNSAPPKGTPPLSSKAGSSTTTSGPVSEEEIRAVLRQKTPVTTQDLVAKFKARLRCSEDKQAFAEILKRISKIQKTTSGASYVILRDK*

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