SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G32300 | AT | Annotation by Michelle Graham. TAIR10: uclacyanin 1 | chr2:13722510-13723464 FORWARD LENGTH=261 | SoyBase | E_val: 1.00E-20 | ISS |
| GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0031225 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| PF02298 | PFAM | Plastocyanin-like domain | JGI | ISS | |
| UniRef100_I1MFM8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFM8_SOYBN | SoyBase | E_val: 4.00E-126 | ISS |
| UniRef100_Q2HT27 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Blue (Type 1) copper domain n=1 Tax=Medicago truncatula RepID=Q2HT27_MEDTR | SoyBase | E_val: 5.00E-68 | ISS |
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Glyma15g12080 not represented in the dataset |
Glyma15g12080 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g01250 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g114100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g12080.1 sequence type=CDS gene model=Glyma15g12080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAATGGGTAAAGGGATGATTTTTATTGTTGCTCTGGTGGCCATTTGCCTTGGTGGGAAATGGGTGGAAGCGCAGGTGCACCATGTGGTCGGAGCAGACCGTGGTTGGGATCAAACCTCAGACCTCGTTTCCTGGGCTGCAGGCAGGGTCTTCAGGGTTGGAGACCAAATTTGGCTTACCTACTCCGTGACTCAGGGATTAGTCGCAGAGCTGAAAAGCAAAGAGGAATATGAGGCATGTGATGTGAGCAACCCCATCAAGATGTACACAGAGGGTTTGCATACTATCCCACTTGAGAGTGAAGGAATGAGGTATTTTGTGAGCAGTGAACCAGAGAATTGCAAAAATGGTCTCAAGCTACATATTGAGGTTCTGCCCAAGGCTGATGAACGCATCATAGAGTCTTCTACCCTAACAGATGAGGCTGTGGCGCCCACCACTCCTTCTGGTTCAGCACGTTATGGGCACAACACTATGTTAATGCTCACGGTTATATTGTTTGTCGTCATAGGCCTTGCTTACTGA
>Glyma15g12080.1 sequence type=predicted peptide gene model=Glyma15g12080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKMGKGMIFIVALVAICLGGKWVEAQVHHVVGADRGWDQTSDLVSWAAGRVFRVGDQIWLTYSVTQGLVAELKSKEEYEACDVSNPIKMYTEGLHTIPLESEGMRYFVSSEPENCKNGLKLHIEVLPKADERIIESSTLTDEAVAPTTPSGSARYGHNTMLMLTVILFVVIGLAY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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